# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3hbkA 245 3.38e-10 3h3lA 241 5.28e-10 3immA 201 2.94e-08 1oq1A 223 0.05779 b.29.1.17 93408 1dypA 271 0.3244 b.29.1.2 24185 2vy0A 264 0.3625 3ilfA 268 0.5472 3juuA 280 0.5957 1gbg 214 0.6406 2ayh 214 1.023 1gbgA 214 1.958 b.29.1.2 24171 1gv9A 260 2.956 b.29.1.13 70596 2a6zA 222 3.648 b.29.1.13 126319 2ealA 148 4.212 1o4yA 288 4.426 b.29.1.2 92473 1ux6A 350 4.563 b.29.1.16,g.75.1.1 100145,100146 2hykA 245 4.901 2durA 253 4.947 1uaiA 224 5.122 b.29.1.18 107761 1upsA 420 5.147 b.29.1.2,b.42.2.3 113394,113395 2ayhA 214 6.055 b.29.1.2 24172 2uwaA 274 6.337 1a8d 452 6.524 2zhnA 148 6.970 2w68A 195 6.973 3gneA 252 7.175 2d6mA 159 7.820 3dgtA 280 7.828 2a6vA 226 8.021 b.29.1.13 126312 2yv8A 164 8.122 1gzwA 134 9.566 b.29.1.3 90535 1ww7A 160 10.17 1bkzA 135 10.44 b.29.1.3 24202 1n1tA 641 11.82 b.29.1.15,b.68.1.1 79821,79822 1a3k 137 11.89 1sltA 134 12.21 b.29.1.3 24186 2uurA 245 13.28 1j83A 180 13.29 b.18.1.12 66430 1y4wA 518 13.69 b.29.1.19,b.67.2.3 116470,116471 1vavA 222 16.53 b.29.1.18 108472 1yrzA 528 20.12 b.29.1.23,b.67.2.1 123948,123949 1diwA 441 20.13 b.29.1.6,b.42.4.2 24264,25609 1lcl 142 21.02 1egnA 434 21.21 b.29.1.10 59411 1kjlA 146 21.36 b.29.1.3 118689 1mz5A 638 21.94 b.29.1.15,b.68.1.1 79679,79680 1w6nA 134 22.18 b.29.1.3 114275 2r16A 182 23.05 1c1lA 136 24.28 b.29.1.3 24219 2h0bA 184 24.33 2nn8A 138 24.71 b.29.1.3 138392 1epwA 1290 26.12 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1igtD 444 27.63 b.1.1.1,b.1.1.2,b.1.1.2,b.1.1.2 19767,20871,20872,20873 1gnyA 153 27.76 b.18.1.11 65404 1d0hA 469 27.96 b.29.1.6,b.42.4.2 24265,25610 1a78A 134 29.13 b.29.1.3 24212 1hdkA 141 30.69 b.29.1.3 65807 3b9cA 144 32.60 1is3A 135 32.95 b.29.1.3 76773 1q2bA 434 33.17 b.29.1.10 95624 1yo8A 634 34.94 2v3iA 434 36.17 b.29.1.10 152458 2r0hA 164 37.07 1dykA 394 38.32 b.29.1.4,b.29.1.4 24223,24224 1celA 434 39.66 b.29.1.10 24280 1a8dA 452 39.76 b.29.1.6,b.42.4.2 24262,25607 1ogaE 252 40.38 b.1.1.1,b.1.1.2 86992,86993 2erfA 209 40.63 b.29.1.4 132287 1wcuA 153 41.90 2czrA 226 42.08 c.52.4.1 146440 1h0bA 256 43.23 b.29.1.11 83422 8fabA 212 43.77 b.1.1.1,b.1.1.2 19772,20882 3duiA 135 43.91 1axkA 394 44.62 b.29.1.2,b.29.1.11 24181,24315 2cl2A 298 45.29 2gtiA 370 46.48 c.66.1.48,d.294.1.2 135652,135653 1mveA 243 48.10 b.29.1.2 85140 2a5zA 262 48.41 b.29.1.24 126184 1pz7A 204 48.57 b.29.1.4 95405 3b3qE 197 49.04 b.29.1.4 154813 2jd4A 383 55.38 1ca1 370 55.43 1gttA 429 57.12 d.177.1.1,d.177.1.1 70529,70530 1sacA 204 58.11 b.29.1.5 24237 1oa2A 218 58.68 b.29.1.11 86721 1yewA 382 59.33 3hr9A 241 60.61 3hmyA 450 62.73 2rfwA 430 63.00 1efuA 385 64.72 b.43.3.1,b.44.1.1,c.37.1.8 25682,25722,32115 1ms9A 648 65.25 b.29.1.15,b.68.1.1 85088,85089 2axhA 242 65.78 b.1.1.1,b.1.1.2 127490,127491 1kgcE 242 66.12 b.1.1.1,b.1.1.2 77386,77387 2vlmE 244 67.67 b.1.1.1,b.1.1.2 153293,153294 2w08A 204 69.23 1qu0A 191 70.12 b.29.1.4 24225 3c2uA 538 71.09 1zbtA 371 71.99 2ak4E 245 73.72 b.1.1.1,b.1.1.2 144810,144811 1hlcA 129 75.66 b.29.1.3 24208 1cpnA 208 78.08 b.29.1.2 24175 2jk9A 212 78.56 3bodA 178 78.74 1c4rA 182 78.75 b.29.1.4 24229 1yifA 533 78.81 b.29.1.23,b.67.2.1 123283,123284 1y7bA 542 82.08 b.29.1.23,b.67.2.1 122687,122688 2fnjA 226 84.23 b.29.1.22 133818 2zzjA 238 87.50 2fkcA 247 87.60 3he7D 242 87.64 3flpA 217 89.28 3lmjL 217 89.70