# List of top-scoring protein chains for T0518.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 2.38e-25 3hbkA 245 3.65e-24 3immA 201 1.76e-17 2hykA 245 1.04e-16 2vy0A 264 3.84e-16 1gbgA 214 9.02e-15 b.29.1.2 24171 1u0aA 214 5.06e-14 2ayhA 214 7.43e-14 b.29.1.2 24172 1macA 212 2.21e-13 b.29.1.2 24183 3d6eA 201 1.38e-12 1cpnA 208 6.93e-11 b.29.1.2 24175 1cpmA 214 8.24e-11 b.29.1.2 24178 1axkA 394 9.80e-11 b.29.1.2,b.29.1.11 24181,24315 3dgtA 280 2.53e-10 1ajkA 214 1.69e-08 b.29.1.2 24176 1dypA 271 1.07e-07 b.29.1.2 24185 2r49A 241 1.07e-05 3juuA 280 1.18e-05 1mveA 243 1.59e-05 b.29.1.2 85140 1zm1A 241 1.84e-05 b.29.1.2 125278 1ajoA 214 2.70e-05 b.29.1.2 24179 3hr9A 241 3.22e-05 1upsA 420 0.000260 b.29.1.2,b.42.2.3 113394,113395 1o4zA 346 0.000339 b.29.1.2 92474 3ilfA 268 0.000417 1o4yA 288 0.000642 b.29.1.2 92473 1urxA 282 0.001095 b.29.1.2 99837 2vh9A 290 0.003220 2uwcA 271 0.01372 2uwaA 274 0.02125 2uwbA 267 0.03797 1umzA 278 0.2621 b.29.1.2 99639 1kdkA 177 0.9829 b.29.1.4 72351 1lhwA 189 0.996 b.29.1.4 77966 1f5fA 205 1.120 b.29.1.4 24222 1d2sA 170 2.530 b.29.1.4 24221 2w39A 298 4.206 1oq1A 223 4.339 b.29.1.17 93408 2a6zA 222 5.161 b.29.1.13 126319 2zzjA 238 6.532 2a6yA 256 7.154 b.29.1.13 126318 2r16A 182 8.631 1l1yA 678 9.390 a.102.1.2 73486 1i19A 561 10.02 d.58.32.3,d.145.1.1 61522,61523 2i0kA 561 10.02 d.58.32.3,d.145.1.1 147480,147481 2jemA 261 12.42 1uaiA 224 14.00 b.29.1.18 107761 1r6xA 395 15.89 b.122.1.3,c.26.1.5 97167,97168 1gv9A 260 16.74 b.29.1.13 70596 1r1zA 263 17.46 b.29.1.13 96840 2wlqA 298 17.68 3lcpA 247 18.64 2jenA 261 19.14 3a4uA 255 20.33 1q8mA 127 21.36 b.1.1.1 96215 1smoA 119 22.90 b.1.1.1 105764 1r42A 615 23.18 d.92.1.5 96968 2w68A 195 23.46 3ks7A 397 24.33 1mppA 361 28.52 b.50.1.2 26856 3d4fA 286 29.16 1hdkA 141 30.26 b.29.1.3 65807 1lclA 142 30.35 b.29.1.3 24216 3a42A 295 32.54 3a46A 289 33.32 1vplA 256 33.87 c.37.1.12 113966 2nw2B 243 35.43 1gmeA 151 36.23 b.15.1.1 65305 1fgjA 546 38.39 a.138.1.3 19679 3k8nA 185 40.71 1lsyA 147 41.23 d.2.1.2 36347 1g8fA 511 42.95 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1okqA 394 43.51 b.29.1.4,b.29.1.4 93267,93268 1pjaA 302 44.74 c.69.1.13 94758 2h0bA 184 45.05 1j70A 514 45.47 b.122.1.3,c.26.1.5,c.37.1.15 84118,84119,84120 1jryA 571 46.44 a.138.1.3,c.3.1.4,d.168.1.1 67199,67200,67201 1jecA 510 47.83 b.122.1.3,c.26.1.5,c.37.1.15 66595,66596,66597 3b72A 147 48.87 d.2.1.2 154915 16vpA 366 50.66 d.180.1.1 42601 1q9iA 571 50.74 a.138.1.3,c.3.1.4,d.168.1.1 96273,96274,96275 1dykA 394 50.78 b.29.1.4,b.29.1.4 24223,24224 1qu0A 191 51.03 b.29.1.4 24225 2b7rA 571 51.11 a.138.1.3,c.3.1.4,d.168.1.1 128049,128050,128051 2b7sA 571 51.13 a.138.1.3,c.3.1.4,d.168.1.1 128052,128053,128054 1m64A 571 51.75 a.138.1.3,c.3.1.4,d.168.1.1 78683,78684,78685 3by0A 198 52.52 2jd4A 383 52.91 1p2hA 571 53.30 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1p2eA 571 53.40 a.138.1.3,c.3.1.4,d.168.1.1 93926,93927,93928 3f1jA 142 54.35 1y0pA 571 54.50 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 1e39A 571 55.08 a.138.1.3,c.3.1.4,d.168.1.1 19694,30431,42314 1lj1A 571 55.54 a.138.1.3,c.3.1.4,d.168.1.1 78023,78024,78025 1kssA 571 55.93 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 2bibA 547 57.03 b.109.1.1,d.157.1.8 128581,128582 1jrxA 571 58.15 a.138.1.3,c.3.1.4,d.168.1.1 67193,67194,67195 3cmpA 198 58.19 2jj6A 134 58.35 1ksuA 571 58.37 a.138.1.3,c.3.1.4,d.168.1.1 72931,72932,72933 2qbxA 208 60.59 1qreA 247 61.74 b.81.1.5 28066 1x50A 164 64.19 2dckA 354 64.67 2e31A 297 66.63 2cwlA 302 66.81 a.25.1.3 130927 1ny6A 267 68.09 c.37.1.20 92321 2dchX 216 74.91 2ix8A 976 76.24 2iw3A 986 76.91 2v8tA 302 78.49 1dctA 324 78.60 c.66.1.26 34244 1jrzA 571 79.53 a.138.1.3,c.3.1.4,d.168.1.1 67205,67206,67207 2qeaA 160 82.47