# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 2.56e-19 3hbkA 245 3.56e-18 3immA 201 4.42e-15 1dypA 271 8.25e-12 b.29.1.2 24185 2vy0A 264 1.63e-11 2hykA 245 3.13e-11 2ayh 214 3.33e-11 2ayhA 214 3.45e-11 b.29.1.2 24172 3juuA 280 3.83e-11 1o4yA 288 5.04e-11 b.29.1.2 92473 1gbg 214 1.32e-10 1gbgA 214 1.50e-10 b.29.1.2 24171 3dgtA 280 1.69e-10 3ilfA 268 3.28e-10 1upsA 420 3.53e-10 b.29.1.2,b.42.2.3 113394,113395 2uwaA 274 4.57e-10 2w39A 298 6.54e-09 2cl2A 298 1.31e-08 3hr9A 241 2.10e-08 1mveA 243 4.87e-08 b.29.1.2 85140 1umzA 278 7.53e-08 b.29.1.2 99639 1cpnA 208 1.22e-07 b.29.1.2 24175 1ajoA 214 8.27e-05 b.29.1.2 24179 1ajkA 214 0.000249 b.29.1.2 24176 1dykA 394 0.008776 b.29.1.4,b.29.1.4 24223,24224 1oq1A 223 0.02646 b.29.1.17 93408 2zzjA 238 0.04183 3gneA 252 0.1239 2jd4A 383 0.1484 2wjsA 608 0.1598 3b3qE 197 0.2382 b.29.1.4 154813 1c4rA 182 0.2470 b.29.1.4 24229 1h30A 422 0.3043 b.29.1.4,b.29.1.4 76604,76605 1qu0A 191 0.3129 b.29.1.4 24225 2v73A 191 0.4459 3bodA 178 0.4676 2h0bA 184 0.4958 2uurA 245 0.5641 2a6vA 226 0.6820 b.29.1.13 126312 1sacA 204 0.6989 b.29.1.5 24237 2cwsA 237 0.8105 2durA 253 0.9229 2vu9A 444 0.9251 1d2sA 170 1.190 b.29.1.4 24221 2r16A 182 1.324 1pz7A 204 1.376 b.29.1.4 95405 2a6zA 222 1.510 b.29.1.13 126319 3flpA 217 2.274 1gv9A 260 2.498 b.29.1.13 70596 1yrzA 528 3.219 b.29.1.23,b.67.2.1 123948,123949 1a8dA 452 3.279 b.29.1.6,b.42.4.2 24262,25607 2vxrA 482 3.281 2erfA 209 3.466 b.29.1.4 132287 3kf5A 512 3.914 2w08A 204 4.409 1uaiA 224 5.978 b.29.1.18 107761 3hmyA 450 6.034 1y4wA 518 8.582 b.29.1.19,b.67.2.3 116470,116471 1a8d 452 8.852 3kf3A 509 9.288 3emwA 217 10.13 1epwA 1290 10.44 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1i4uA 181 11.37 b.60.1.1 61732 1oacA 727 12.16 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1y2tA 142 13.15 b.97.1.2 116407 3hi7A 731 16.19 1w2tA 432 16.46 b.29.1.19,b.67.2.3 120607,120608 1uypA 432 16.84 b.29.1.19,b.67.2.3 100176,100177 1x99A 145 16.86 b.97.1.2 114978 1is3A 135 18.42 b.29.1.3 76773 2eceA 462 20.02 1x89A 178 21.32 b.60.1.1 121799 3bvxA 1045 22.10 a.8.3.1,b.30.5.6,c.6.2.1 155676,155677,155678 1qwnA 1045 22.59 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 3b9cA 144 23.97 1n9eA 787 24.68 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 2rc8A 294 25.73 2w68A 195 27.00 3ks7A 397 27.36 2fnjA 226 27.69 b.29.1.22 133818 1j83A 180 28.61 b.18.1.12 66430 1yifA 533 28.61 b.29.1.23,b.67.2.1 123283,123284 3dszA 186 31.38 3hikA 237 31.49 2wewA 172 31.76 2ofcA 142 32.10 2rcaA 292 33.02 1n1tA 641 34.63 b.29.1.15,b.68.1.1 79821,79822 1od3A 168 37.28 b.18.1.10 86825 3hihA 223 37.31 2hyxA 352 37.66 1gwmA 153 38.07 b.18.1.19 83348 2wnxA 170 39.78 1ms9A 648 42.05 b.29.1.15,b.68.1.1 85088,85089 1hdkA 141 43.47 b.29.1.3 65807 2c43A 323 44.51 1shsA 147 50.44 b.15.1.1 23675 1c1lA 136 50.63 b.29.1.3 24219 2f6eA 127 50.86 2bibA 547 51.42 b.109.1.1,d.157.1.8 128581,128582 2oqeA 660 52.46 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1jk7A 323 53.14 d.159.1.3 63144 1y0yA 353 56.16 b.49.3.1,c.56.5.4 122514,122515 1o91A 178 59.07 b.22.1.1 92656 1umwA 237 61.10 d.223.1.2,d.223.1.2 99631,99632 3h6jA 438 63.57 1oc0A 379 64.71 e.1.1.1 86790 1tf4A 605 64.89 a.102.1.2,b.2.2.2 18827,22393 3dtqA 186 64.90 2ow6A 1045 68.04 a.8.3.1,b.30.5.6,c.6.2.1 149039,149040,149041 2bolA 314 68.32 1guiA 155 68.36 b.18.1.14 76351 1s1dA 331 68.40 b.67.3.1 98344 1w6nA 134 68.98 b.29.1.3 114275 2w5fA 540 69.16 1y7mA 164 69.76 b.160.1.1,d.7.1.1 122696,122697 1bkzA 135 70.09 b.29.1.3 24202 3kcgI 432 74.37 2wnwA 447 79.76 2sliA 679 80.22 b.29.1.9,b.68.1.1 24274,27611 3loyA 633 80.81 3silA 379 80.93 b.68.1.1 27542 2vvfA 269 82.57 3cmpA 198 84.09 1kxoA 184 85.79 b.60.1.1 84475 2zglA 167 86.62 2zexA 147 88.15 1u0tA 307 88.82 e.52.1.1 107567 2j8gA 339 89.13 b.109.1.1,c.1.8.8 147915,147916