# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 1.17e-19 3hbkA 245 1.62e-18 3immA 201 3.35e-15 1dypA 271 3.99e-12 b.29.1.2 24185 2vy0A 264 5.42e-12 2ayhA 214 7.03e-12 b.29.1.2 24172 2hykA 245 7.42e-12 2ayh 214 8.50e-12 3juuA 280 1.13e-11 1o4yA 288 4.18e-11 b.29.1.2 92473 1gbgA 214 4.40e-11 b.29.1.2 24171 1gbg 214 6.20e-11 3dgtA 280 8.54e-11 3ilfA 268 1.63e-10 2uwaA 274 1.71e-10 1upsA 420 2.35e-10 b.29.1.2,b.42.2.3 113394,113395 2w39A 298 7.23e-09 2cl2A 298 9.69e-09 3hr9A 241 1.03e-08 1mveA 243 1.87e-08 b.29.1.2 85140 1umzA 278 2.50e-08 b.29.1.2 99639 1cpnA 208 5.01e-08 b.29.1.2 24175 1ajoA 214 3.66e-05 b.29.1.2 24179 1ajkA 214 8.61e-05 b.29.1.2 24176 1dykA 394 0.01137 b.29.1.4,b.29.1.4 24223,24224 2zzjA 238 0.02852 1oq1A 223 0.03506 b.29.1.17 93408 3gneA 252 0.04713 2jd4A 383 0.1412 3b3qE 197 0.2018 b.29.1.4 154813 2wjsA 608 0.2275 1qu0A 191 0.2542 b.29.1.4 24225 2v73A 191 0.3468 2h0bA 184 0.3468 1h30A 422 0.3841 b.29.1.4,b.29.1.4 76604,76605 2cwsA 237 0.3950 2uurA 245 0.4224 1c4rA 182 0.4786 b.29.1.4 24229 2durA 253 0.6712 2vu9A 444 0.7701 1d2sA 170 0.8116 b.29.1.4 24221 3bodA 178 0.8153 2r16A 182 0.8826 1sacA 204 0.9054 b.29.1.5 24237 3flpA 217 0.9318 1pz7A 204 1.174 b.29.1.4 95405 2a6vA 226 1.478 b.29.1.13 126312 2erfA 209 1.699 b.29.1.4 132287 1uaiA 224 1.776 b.29.1.18 107761 2vxrA 482 2.069 2a6zA 222 2.235 b.29.1.13 126319 3hmyA 450 2.626 1yrzA 528 3.061 b.29.1.23,b.67.2.1 123948,123949 1a8dA 452 3.159 b.29.1.6,b.42.4.2 24262,25607 3kf5A 512 3.477 1gv9A 260 3.612 b.29.1.13 70596 1y4wA 518 4.229 b.29.1.19,b.67.2.3 116470,116471 2w08A 204 4.954 1a8d 452 7.219 3kf3A 509 8.146 1epwA 1290 9.736 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 3emwA 217 10.57 1y2tA 142 10.60 b.97.1.2 116407 1x99A 145 11.26 b.97.1.2 114978 1j83A 180 12.88 b.18.1.12 66430 1is3A 135 16.12 b.29.1.3 76773 2fnjA 226 17.14 b.29.1.22 133818 1uypA 432 17.32 b.29.1.19,b.67.2.3 100176,100177 2wnxA 170 17.80 1yifA 533 18.73 b.29.1.23,b.67.2.1 123283,123284 3bvxA 1045 19.49 a.8.3.1,b.30.5.6,c.6.2.1 155676,155677,155678 1oacA 727 20.31 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 2ofcA 142 23.05 2w68A 195 23.61 1i4uA 181 24.11 b.60.1.1 61732 3b9cA 144 26.69 1w2tA 432 26.83 b.29.1.19,b.67.2.3 120607,120608 1shsA 147 26.95 b.15.1.1 23675 3hikA 237 28.02 3hi7A 731 30.85 1gwmA 153 30.97 b.18.1.19 83348 1bkzA 135 31.79 b.29.1.3 24202 2c43A 323 32.35 1qwnA 1045 32.71 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1hdkA 141 32.89 b.29.1.3 65807 2eceA 462 34.91 1n1tA 641 36.30 b.29.1.15,b.68.1.1 79821,79822 1jk7A 323 37.33 d.159.1.3 63144 2vvfA 269 37.34 3hihA 223 38.04 2vtcA 249 38.46 1o91A 178 38.77 b.22.1.1 92656 2bibA 547 41.34 b.109.1.1,d.157.1.8 128581,128582 1ms9A 648 41.59 b.29.1.15,b.68.1.1 85088,85089 2sliA 679 43.09 b.29.1.9,b.68.1.1 24274,27611 2f6eA 127 44.42 1w6nA 134 44.61 b.29.1.3 114275 2hyxA 352 46.74 1y0yA 353 48.32 b.49.3.1,c.56.5.4 122514,122515 1u0tA 307 48.38 e.52.1.1 107567 3ks7A 397 49.53 2wewA 172 50.73 1s1dA 331 53.78 b.67.3.1 98344 1guiA 155 54.44 b.18.1.14 76351 2w5fA 540 56.01 3dszA 186 57.06 3silA 379 59.03 b.68.1.1 27542 2zxqA 1376 62.92 1y7mA 164 63.71 b.160.1.1,d.7.1.1 122696,122697 1od3A 168 63.73 b.18.1.10 86825 1x89A 178 63.84 b.60.1.1 121799 1umwA 237 64.85 d.223.1.2,d.223.1.2 99631,99632 1n9eA 787 72.25 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 2j8gA 339 72.55 b.109.1.1,c.1.8.8 147915,147916 1c1lA 136 74.24 b.29.1.3 24219 2zexA 147 75.45 2ow6A 1045 75.89 a.8.3.1,b.30.5.6,c.6.2.1 149039,149040,149041 1gmeA 151 76.87 b.15.1.1 65305 1wcuA 153 77.13 2wx6A 388 77.39 3e53A 480 81.23 2zglA 167 81.92 2rc8A 294 82.05 2zl8A 638 85.97 b.30.2.1,d.17.2.1,d.17.2.1 154620,154621,154622 2wj7A 94 86.48 3dtqA 186 87.28 2d1wA 638 87.45 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 1c3hA 137 87.52 b.22.1.1 90405