# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 5.04e-20 3hbkA 245 6.78e-19 3immA 201 1.33e-15 1dypA 271 5.97e-12 b.29.1.2 24185 2vy0A 264 6.78e-12 2hykA 245 1.39e-11 2ayh 214 1.68e-11 2ayhA 214 1.74e-11 b.29.1.2 24172 3juuA 280 4.25e-11 1gbgA 214 7.85e-11 b.29.1.2 24171 1o4yA 288 9.31e-11 b.29.1.2 92473 1gbg 214 1.04e-10 3dgtA 280 2.85e-10 2uwaA 274 3.85e-10 1upsA 420 5.01e-10 b.29.1.2,b.42.2.3 113394,113395 3ilfA 268 5.02e-10 2w39A 298 4.02e-09 3hr9A 241 8.14e-09 2cl2A 298 9.69e-09 1mveA 243 1.90e-08 b.29.1.2 85140 1umzA 278 3.38e-08 b.29.1.2 99639 1cpnA 208 5.83e-08 b.29.1.2 24175 1ajoA 214 3.35e-05 b.29.1.2 24179 1ajkA 214 0.000145 b.29.1.2 24176 1dykA 394 0.01206 b.29.1.4,b.29.1.4 24223,24224 2zzjA 238 0.02865 2wjsA 608 0.03685 3gneA 252 0.04294 2jd4A 383 0.04383 1oq1A 223 0.05291 b.29.1.17 93408 2cwsA 237 0.1387 1h30A 422 0.1604 b.29.1.4,b.29.1.4 76604,76605 1qu0A 191 0.1699 b.29.1.4 24225 2r16A 182 0.1766 1c4rA 182 0.1851 b.29.1.4 24229 3bodA 178 0.2356 2h0bA 184 0.2725 3b3qE 197 0.3458 b.29.1.4 154813 1sacA 204 0.3550 b.29.1.5 24237 1d2sA 170 0.4898 b.29.1.4 24221 2vu9A 444 0.5812 1uaiA 224 0.5909 b.29.1.18 107761 3flpA 217 0.6274 1pz7A 204 0.9414 b.29.1.4 95405 2uurA 245 0.9786 2v73A 191 0.9913 3hmyA 450 1.193 2vxrA 482 1.252 2erfA 209 1.927 b.29.1.4 132287 2a6vA 226 2.070 b.29.1.13 126312 1yrzA 528 2.497 b.29.1.23,b.67.2.1 123948,123949 1a8dA 452 3.306 b.29.1.6,b.42.4.2 24262,25607 2durA 253 3.623 2w08A 204 3.809 1ms9A 648 3.846 b.29.1.15,b.68.1.1 85088,85089 1n1tA 641 5.019 b.29.1.15,b.68.1.1 79821,79822 1y4wA 518 6.790 b.29.1.19,b.67.2.3 116470,116471 1gv9A 260 7.131 b.29.1.13 70596 2a6zA 222 7.915 b.29.1.13 126319 1y2tA 142 8.613 b.97.1.2 116407 3kf3A 509 8.751 1w2tA 432 9.075 b.29.1.19,b.67.2.3 120607,120608 3kf5A 512 9.250 1a8d 452 9.297 2w68A 195 9.314 2bibA 547 9.776 b.109.1.1,d.157.1.8 128581,128582 1x99A 145 9.779 b.97.1.2 114978 1s1dA 331 10.08 b.67.3.1 98344 1gwmA 153 11.63 b.18.1.19 83348 1bkzA 135 11.70 b.29.1.3 24202 2f6eA 127 12.34 3b9cA 144 13.91 1i4uA 181 16.85 b.60.1.1 61732 1is3A 135 18.21 b.29.1.3 76773 2sliA 679 18.32 b.29.1.9,b.68.1.1 24274,27611 3hi7A 731 18.49 1hdkA 141 18.69 b.29.1.3 65807 2ofcA 142 21.48 1gmeA 151 23.89 b.15.1.1 65305 2wnxA 170 24.14 1uypA 432 25.01 b.29.1.19,b.67.2.3 100176,100177 1c1lA 136 26.26 b.29.1.3 24219 1kbvA 327 28.26 b.6.1.3,b.6.1.3 68395,68396 3emwA 217 28.28 1wcuA 153 28.41 2w5fA 540 29.91 1oacA 727 30.63 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 3loyA 633 32.96 1yifA 533 33.44 b.29.1.23,b.67.2.1 123283,123284 3l4yA 875 34.03 3hrpA 409 38.52 3ks7A 397 40.16 1x89A 178 45.11 b.60.1.1 121799 1vavA 222 46.40 b.29.1.18 108472 2dg1A 333 47.43 b.68.6.1 131493 3ikwA 374 48.80 1od3A 168 48.85 b.18.1.10 86825 2oqeA 660 49.78 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1shsA 147 49.88 b.15.1.1 23675 2vvfA 269 50.38 3hihA 223 51.59 2psbA 320 51.76 c.153.1.1 149819 1jk7A 323 54.20 d.159.1.3 63144 3hikA 237 56.85 1pk6A 133 59.94 b.22.1.1 94801 2k4tA 291 60.08 2rc8A 294 61.21 1j83A 180 61.49 b.18.1.12 66430 1mt6A 280 62.96 b.76.2.1,b.85.7.1 79446,79447 2j8gA 339 63.08 b.109.1.1,c.1.8.8 147915,147916 2qmjA 870 64.62 2zl8A 638 64.86 b.30.2.1,d.17.2.1,d.17.2.1 154620,154621,154622 2a74A 643 65.17 2c43A 323 65.51 3ecqA 1531 66.27 3dszA 186 66.61 1uxxX 133 67.03 b.18.1.10 100169 1guiA 155 67.58 b.18.1.14 76351 2wj7A 94 67.68 2ih8A 559 69.41 b.6.1.3,b.6.1.3,b.6.1.3 137407,137408,137409 1gttA 429 70.06 d.177.1.1,d.177.1.1 70529,70530 1tf4A 605 71.40 a.102.1.2,b.2.2.2 18827,22393 1dfcA 493 71.61 b.42.5.1,b.42.5.1,b.42.5.1,b.42.5.1 25616,25617,25618,25619 1o91A 178 72.94 b.22.1.1 92656 2rcaA 292 74.51 2bolA 314 74.86 2zexA 147 77.50 2i5vO 251 77.68 2g8cO 251 79.23 1gu3A 149 81.35 b.18.1.14 76350 2zxqA 1376 82.52 1kxoA 184 83.00 b.60.1.1 84475 1n9eA 787 83.62 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 3silA 379 86.19 b.68.1.1 27542 2p2oA 185 87.71 2sli 679 88.10