# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 7.28e-21 3hbkA 245 2.72e-19 3immA 201 3.59e-16 1dypA 271 6.59e-13 b.29.1.2 24185 2vy0A 264 8.35e-13 2ayh 214 1.30e-12 2ayhA 214 1.41e-12 b.29.1.2 24172 2hykA 245 2.92e-12 1o4yA 288 3.78e-12 b.29.1.2 92473 3juuA 280 5.24e-12 1gbgA 214 7.21e-12 b.29.1.2 24171 1gbg 214 1.03e-11 2uwaA 274 4.69e-11 3ilfA 268 4.72e-11 3dgtA 280 5.58e-11 1upsA 420 7.45e-11 b.29.1.2,b.42.2.3 113394,113395 2w39A 298 1.48e-09 2cl2A 298 3.08e-09 3hr9A 241 3.96e-09 1umzA 278 5.66e-09 b.29.1.2 99639 1cpnA 208 9.13e-09 b.29.1.2 24175 1mveA 243 1.01e-08 b.29.1.2 85140 1ajoA 214 2.06e-05 b.29.1.2 24179 1ajkA 214 2.25e-05 b.29.1.2 24176 1dykA 394 0.004374 b.29.1.4,b.29.1.4 24223,24224 2zzjA 238 0.03505 2jd4A 383 0.03815 1oq1A 223 0.04089 b.29.1.17 93408 3gneA 252 0.07288 2wjsA 608 0.07510 3b3qE 197 0.1233 b.29.1.4 154813 1h30A 422 0.1233 b.29.1.4,b.29.1.4 76604,76605 1qu0A 191 0.1265 b.29.1.4 24225 2h0bA 184 0.1482 1c4rA 182 0.1657 b.29.1.4 24229 3bodA 178 0.2638 2cwsA 237 0.2734 1d2sA 170 0.3013 b.29.1.4 24221 2uurA 245 0.3684 2r16A 182 0.3739 1sacA 204 0.4318 b.29.1.5 24237 2v73A 191 0.4511 1pz7A 204 0.5781 b.29.1.4 95405 2durA 253 0.8356 2vu9A 444 0.8500 1uaiA 224 0.9722 b.29.1.18 107761 3flpA 217 1.012 2a6vA 226 1.082 b.29.1.13 126312 2erfA 209 1.334 b.29.1.4 132287 3hmyA 450 1.427 2vxrA 482 1.840 1gv9A 260 2.035 b.29.1.13 70596 1yrzA 528 2.356 b.29.1.23,b.67.2.1 123948,123949 1a8dA 452 2.410 b.29.1.6,b.42.4.2 24262,25607 2a6zA 222 2.880 b.29.1.13 126319 2w08A 204 3.794 3kf5A 512 4.767 1y4wA 518 7.175 b.29.1.19,b.67.2.3 116470,116471 1a8d 452 7.244 1i4uA 181 7.979 b.60.1.1 61732 1ms9A 648 8.190 b.29.1.15,b.68.1.1 85088,85089 1is3A 135 10.15 b.29.1.3 76773 1y2tA 142 10.69 b.97.1.2 116407 1w2tA 432 10.88 b.29.1.19,b.67.2.3 120607,120608 1epwA 1290 12.71 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1x89A 178 13.74 b.60.1.1 121799 1uypA 432 14.06 b.29.1.19,b.67.2.3 100176,100177 1gwmA 153 14.49 b.18.1.19 83348 1x99A 145 15.82 b.97.1.2 114978 1n1tA 641 17.15 b.29.1.15,b.68.1.1 79821,79822 3emwA 217 17.35 1shsA 147 17.85 b.15.1.1 23675 2bibA 547 19.19 b.109.1.1,d.157.1.8 128581,128582 2rc8A 294 21.26 2wnwA 447 21.62 3hi7A 731 23.70 3kf3A 509 24.41 3hrpA 409 24.84 2w68A 195 25.12 3b9cA 144 25.71 2ofcA 142 27.36 1j83A 180 29.70 b.18.1.12 66430 1yifA 533 30.04 b.29.1.23,b.67.2.1 123283,123284 3hihA 223 31.53 3dszA 186 31.95 2wnxA 170 32.27 2eceA 462 32.39 3hikA 237 33.48 2c43A 323 35.18 1hdkA 141 35.60 b.29.1.3 65807 2rcaA 292 35.85 2f6eA 127 36.12 3dtqA 186 36.60 1bkzA 135 37.02 b.29.1.3 24202 2wewA 172 38.17 3ks7A 397 38.58 2hyxA 352 38.79 1kxoA 184 38.82 b.60.1.1 84475 1o91A 178 40.16 b.22.1.1 92656 2sliA 679 40.68 b.29.1.9,b.68.1.1 24274,27611 1s1dA 331 41.79 b.67.3.1 98344 1oacA 727 45.52 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 2zl8A 638 46.03 b.30.2.1,d.17.2.1,d.17.2.1 154620,154621,154622 2j8gA 339 47.42 b.109.1.1,c.1.8.8 147915,147916 1umwA 237 51.17 d.223.1.2,d.223.1.2 99631,99632 1kbvA 327 52.86 b.6.1.3,b.6.1.3 68395,68396 2vtcA 249 53.44 1c1lA 136 54.73 b.29.1.3 24219 1n9eA 787 57.21 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1y0yA 353 57.31 b.49.3.1,c.56.5.4 122514,122515 1jk7A 323 58.84 d.159.1.3 63144 2fnjA 226 59.33 b.29.1.22 133818 2d1wA 638 60.11 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 1od3A 168 61.01 b.18.1.10 86825 2acoA 173 61.63 2wj7A 94 64.93 2oasA 436 66.20 1wcuA 153 66.34 2blnA 305 67.42 b.46.1.1,c.65.1.1 128734,128735 2r0hA 164 69.69 3loyA 633 72.87 3silA 379 73.79 b.68.1.1 27542 1g5aA 628 74.42 b.71.1.1,c.1.8.1 65152,65153 1dueA 242 75.15 b.47.1.1 76140 2dfuA 264 76.83 1jhnA 424 79.91 b.104.1.1,b.29.1.12 66722,70060 2zglA 167 81.10 2qtsA 438 82.06 2vvfA 269 82.27 1c3hA 137 82.42 b.22.1.1 90405 2zxqA 1376 82.95 1w6nA 134 88.48 b.29.1.3 114275 1qwnA 1045 88.55 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 2w5fA 540 88.57 1y7mA 164 88.68 b.160.1.1,d.7.1.1 122696,122697