# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 3.46e-20 3hbkA 245 6.94e-19 3immA 201 1.30e-15 1dypA 271 2.08e-12 b.29.1.2 24185 2vy0A 264 3.39e-12 2ayhA 214 4.45e-12 b.29.1.2 24172 2ayh 214 5.21e-12 2hykA 245 9.06e-12 1o4yA 288 1.16e-11 b.29.1.2 92473 3juuA 280 2.03e-11 1gbgA 214 2.74e-11 b.29.1.2 24171 1gbg 214 3.69e-11 3dgtA 280 8.73e-11 2uwaA 274 1.13e-10 3ilfA 268 1.31e-10 1upsA 420 1.82e-10 b.29.1.2,b.42.2.3 113394,113395 2w39A 298 3.08e-09 3hr9A 241 6.42e-09 2cl2A 298 7.03e-09 1umzA 278 9.52e-09 b.29.1.2 99639 1mveA 243 1.72e-08 b.29.1.2 85140 1cpnA 208 1.88e-08 b.29.1.2 24175 1ajoA 214 4.08e-05 b.29.1.2 24179 1ajkA 214 6.35e-05 b.29.1.2 24176 1dykA 394 0.01227 b.29.1.4,b.29.1.4 24223,24224 2zzjA 238 0.02461 1oq1A 223 0.05954 b.29.1.17 93408 3gneA 252 0.07895 2jd4A 383 0.08573 2wjsA 608 0.1339 3b3qE 197 0.2768 b.29.1.4 154813 1h30A 422 0.3011 b.29.1.4,b.29.1.4 76604,76605 1qu0A 191 0.3227 b.29.1.4 24225 2h0bA 184 0.3352 1c4rA 182 0.4501 b.29.1.4 24229 2cwsA 237 0.5874 1sacA 204 0.6262 b.29.1.5 24237 3bodA 178 0.6274 2v73A 191 0.6540 1d2sA 170 0.7608 b.29.1.4 24221 2uurA 245 0.8843 2r16A 182 0.9558 2vu9A 444 1.031 1pz7A 204 1.173 b.29.1.4 95405 2durA 253 1.250 2a6vA 226 1.287 b.29.1.13 126312 3flpA 217 1.820 1uaiA 224 2.286 b.29.1.18 107761 2erfA 209 2.863 b.29.1.4 132287 1a8dA 452 3.325 b.29.1.6,b.42.4.2 24262,25607 3hmyA 450 3.497 2vxrA 482 4.194 1yrzA 528 4.333 b.29.1.23,b.67.2.1 123948,123949 2a6zA 222 4.477 b.29.1.13 126319 1gv9A 260 4.617 b.29.1.13 70596 1i4uA 181 4.974 b.60.1.1 61732 2w08A 204 5.688 3kf5A 512 7.082 1y4wA 518 9.521 b.29.1.19,b.67.2.3 116470,116471 1a8d 452 10.20 1epwA 1290 11.03 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1x89A 178 13.44 b.60.1.1 121799 3emwA 217 13.49 1y2tA 142 14.04 b.97.1.2 116407 1is3A 135 17.69 b.29.1.3 76773 1gwmA 153 18.69 b.18.1.19 83348 1x99A 145 18.78 b.97.1.2 114978 3hrpA 409 18.87 2eceA 462 19.67 2bibA 547 23.99 b.109.1.1,d.157.1.8 128581,128582 1oacA 727 25.76 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 3hi7A 731 25.77 3hihA 223 27.52 2rc8A 294 27.70 1uypA 432 28.90 b.29.1.19,b.67.2.3 100176,100177 1shsA 147 29.66 b.15.1.1 23675 2wnwA 447 30.32 3dszA 186 30.37 2fnjA 226 31.48 b.29.1.22 133818 3ks7A 397 32.06 2w68A 195 32.90 2wnxA 170 34.16 1od3A 168 34.27 b.18.1.10 86825 2wewA 172 34.41 1j83A 180 34.46 b.18.1.12 66430 3hikA 237 35.11 3b9cA 144 37.16 1ms9A 648 37.73 b.29.1.15,b.68.1.1 85088,85089 2c43A 323 37.77 2ofcA 142 39.45 1n9eA 787 39.76 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 3kf3A 509 39.77 1w2tA 432 39.92 b.29.1.19,b.67.2.3 120607,120608 1o91A 178 41.00 b.22.1.1 92656 2rcaA 292 41.87 2f6eA 127 42.65 1kbvA 327 43.53 b.6.1.3,b.6.1.3 68395,68396 3dtqA 186 47.31 1y0yA 353 48.53 b.49.3.1,c.56.5.4 122514,122515 1qwnA 1045 49.46 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1yifA 533 52.47 b.29.1.23,b.67.2.1 123283,123284 1n1tA 641 52.84 b.29.1.15,b.68.1.1 79821,79822 1bkzA 135 53.03 b.29.1.3 24202 1umwA 237 54.50 d.223.1.2,d.223.1.2 99631,99632 1kxoA 184 55.88 b.60.1.1 84475 3bvxA 1045 57.45 a.8.3.1,b.30.5.6,c.6.2.1 155676,155677,155678 1jk7A 323 57.63 d.159.1.3 63144 1jhnA 424 58.88 b.104.1.1,b.29.1.12 66722,70060 2blnA 305 61.22 b.46.1.1,c.65.1.1 128734,128735 2z3zA 706 61.59 1hdkA 141 61.91 b.29.1.3 65807 2w5fA 540 64.81 2acoA 173 65.10 2j8gA 339 66.02 b.109.1.1,c.1.8.8 147915,147916 1mt6A 280 66.05 b.76.2.1,b.85.7.1 79446,79447 1y7mA 164 67.29 b.160.1.1,d.7.1.1 122696,122697 2vtcA 249 67.46 2vvfA 269 68.22 2zl8A 638 71.42 b.30.2.1,d.17.2.1,d.17.2.1 154620,154621,154622 2hyxA 352 71.53 3ikwA 374 73.84 3kcgI 432 75.07 2oqeA 660 75.61 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1g5aA 628 75.92 b.71.1.1,c.1.8.1 65152,65153 3loyA 633 76.42 1c1lA 136 76.81 b.29.1.3 24219 1c3hA 137 76.92 b.22.1.1 90405 1dueA 242 79.70 b.47.1.1 76140 1kt6A 183 84.01 b.60.1.1 84466 2qtsA 438 85.00 1s1dA 331 86.37 b.67.3.1 98344 1jdpA 441 87.34 c.93.1.1 62906