# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 8.59e-21 3hbkA 245 1.98e-19 3immA 201 4.16e-16 1dypA 271 1.21e-12 b.29.1.2 24185 2vy0A 264 1.68e-12 2ayhA 214 2.09e-12 b.29.1.2 24172 2ayh 214 2.62e-12 2hykA 245 5.53e-12 1o4yA 288 7.12e-12 b.29.1.2 92473 3juuA 280 1.11e-11 1gbgA 214 1.53e-11 b.29.1.2 24171 1gbg 214 2.10e-11 3dgtA 280 4.50e-11 2uwaA 274 5.81e-11 1upsA 420 8.74e-11 b.29.1.2,b.42.2.3 113394,113395 3ilfA 268 8.99e-11 2w39A 298 1.53e-09 3hr9A 241 3.13e-09 2cl2A 298 3.51e-09 1umzA 278 7.75e-09 b.29.1.2 99639 1mveA 243 9.00e-09 b.29.1.2 85140 1cpnA 208 1.17e-08 b.29.1.2 24175 1ajoA 214 3.30e-05 b.29.1.2 24179 1ajkA 214 5.29e-05 b.29.1.2 24176 1dykA 394 0.009043 b.29.1.4,b.29.1.4 24223,24224 2zzjA 238 0.02907 2jd4A 383 0.07017 1oq1A 223 0.07369 b.29.1.17 93408 3gneA 252 0.1138 2wjsA 608 0.1147 1h30A 422 0.1861 b.29.1.4,b.29.1.4 76604,76605 3b3qE 197 0.2480 b.29.1.4 154813 1qu0A 191 0.2825 b.29.1.4 24225 2h0bA 184 0.3420 1c4rA 182 0.3882 b.29.1.4 24229 3bodA 178 0.4967 1sacA 204 0.5091 b.29.1.5 24237 2v73A 191 0.6093 1d2sA 170 0.6727 b.29.1.4 24221 2cwsA 237 0.7065 2uurA 245 0.8343 2r16A 182 0.8400 2vu9A 444 0.9320 1pz7A 204 0.9570 b.29.1.4 95405 2durA 253 1.524 2a6vA 226 1.721 b.29.1.13 126312 3flpA 217 1.805 2erfA 209 2.518 b.29.1.4 132287 1uaiA 224 2.536 b.29.1.18 107761 3hmyA 450 3.086 1a8dA 452 3.417 b.29.1.6,b.42.4.2 24262,25607 1i4uA 181 4.486 b.60.1.1 61732 2vxrA 482 5.447 1yrzA 528 5.524 b.29.1.23,b.67.2.1 123948,123949 2a6zA 222 5.630 b.29.1.13 126319 1gv9A 260 5.987 b.29.1.13 70596 2w08A 204 6.555 3kf5A 512 9.319 1epwA 1290 9.660 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1a8d 452 12.90 1x89A 178 15.42 b.60.1.1 121799 1y4wA 518 16.14 b.29.1.19,b.67.2.3 116470,116471 3hi7A 731 17.02 3emwA 217 18.01 1is3A 135 19.40 b.29.1.3 76773 2eceA 462 19.97 1x99A 145 20.15 b.97.1.2 114978 1gwmA 153 20.31 b.18.1.19 83348 1y2tA 142 21.09 b.97.1.2 116407 1oacA 727 25.85 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 3dszA 186 26.25 2rc8A 294 28.69 3hihA 223 29.15 1shsA 147 32.36 b.15.1.1 23675 1y0yA 353 34.18 b.49.3.1,c.56.5.4 122514,122515 1uypA 432 34.23 b.29.1.19,b.67.2.3 100176,100177 3ks7A 397 34.91 3hikA 237 34.91 3hrpA 409 34.95 2c43A 323 35.29 1od3A 168 35.44 b.18.1.10 86825 1n9eA 787 35.51 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 2bibA 547 37.02 b.109.1.1,d.157.1.8 128581,128582 2wnwA 447 37.52 2wewA 172 38.06 2wnxA 170 38.06 1j83A 180 38.60 b.18.1.12 66430 2rcaA 292 39.20 1w2tA 432 40.39 b.29.1.19,b.67.2.3 120607,120608 1jk7A 323 45.19 d.159.1.3 63144 1ms9A 648 46.66 b.29.1.15,b.68.1.1 85088,85089 2f6eA 127 46.78 1mt6A 280 47.03 b.76.2.1,b.85.7.1 79446,79447 1qwnA 1045 47.47 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1o91A 178 48.45 b.22.1.1 92656 3dtqA 186 49.37 2ofcA 142 51.95 2fnjA 226 53.14 b.29.1.22 133818 3kf3A 509 54.18 3b9cA 144 54.25 1kbvA 327 54.33 b.6.1.3,b.6.1.3 68395,68396 2w68A 195 56.21 2vvfA 269 56.96 2blnA 305 58.94 b.46.1.1,c.65.1.1 128734,128735 1kxoA 184 60.20 b.60.1.1 84475 1umwA 237 60.86 d.223.1.2,d.223.1.2 99631,99632 1n1tA 641 60.98 b.29.1.15,b.68.1.1 79821,79822 3kcgI 432 63.62 2b5dX 528 65.91 a.8.3.3,c.6.2.4 127886,127887 1bkzA 135 67.03 b.29.1.3 24202 1g5aA 628 67.56 b.71.1.1,c.1.8.1 65152,65153 1yifA 533 67.82 b.29.1.23,b.67.2.1 123283,123284 2oqeA 660 68.05 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 3bvxA 1045 68.09 a.8.3.1,b.30.5.6,c.6.2.1 155676,155677,155678 1jhnA 424 69.26 b.104.1.1,b.29.1.12 66722,70060 1hdkA 141 69.62 b.29.1.3 65807 2vtcA 249 70.63 2acoA 173 70.81 3loyA 633 73.43 2zl8A 638 73.46 b.30.2.1,d.17.2.1,d.17.2.1 154620,154621,154622 3ikwA 374 73.68 2z3zA 706 73.86 1jdpA 441 74.72 c.93.1.1 62906 1y7mA 164 76.33 b.160.1.1,d.7.1.1 122696,122697 2j8gA 339 76.72 b.109.1.1,c.1.8.8 147915,147916 2hyxA 352 77.02 2qtsA 438 77.48 1c1lA 136 80.51 b.29.1.3 24219 1u0tA 307 80.98 e.52.1.1 107567 1kt6A 183 81.93 b.60.1.1 84466 2w5fA 540 82.96 1oc0A 379 85.61 e.1.1.1 86790 2zexA 147 89.34