# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 3.08e-26 3hbkA 245 1.24e-24 3immA 201 1.16e-20 1dypA 271 1.65e-15 b.29.1.2 24185 2vy0A 264 2.57e-15 2hykA 245 2.89e-15 2ayhA 214 3.07e-15 b.29.1.2 24172 2ayh 214 4.87e-15 3juuA 280 2.50e-14 1gbg 214 4.89e-14 1gbgA 214 5.81e-14 b.29.1.2 24171 3dgtA 280 5.91e-14 1o4yA 288 5.98e-14 b.29.1.2 92473 2uwaA 274 4.99e-13 1upsA 420 5.85e-13 b.29.1.2,b.42.2.3 113394,113395 3ilfA 268 8.45e-13 2w39A 298 9.52e-12 3hr9A 241 1.20e-11 2cl2A 298 3.89e-11 1mveA 243 4.79e-11 b.29.1.2 85140 1cpnA 208 5.63e-11 b.29.1.2 24175 1umzA 278 6.07e-11 b.29.1.2 99639 1ajoA 214 6.85e-07 b.29.1.2 24179 1ajkA 214 9.70e-07 b.29.1.2 24176 2zzjA 238 0.003508 1dykA 394 0.005207 b.29.1.4,b.29.1.4 24223,24224 1qu0A 191 0.005284 b.29.1.4 24225 1oq1A 223 0.005714 b.29.1.17 93408 3gneA 252 0.01144 1c4rA 182 0.01447 b.29.1.4 24229 3b3qE 197 0.01535 b.29.1.4 154813 2h0bA 184 0.02612 2r16A 182 0.02649 1pz7A 204 0.03764 b.29.1.4 95405 2jd4A 383 0.04102 1h30A 422 0.04453 b.29.1.4,b.29.1.4 76604,76605 2cwsA 237 0.05931 3bodA 178 0.06231 2wjsA 608 0.06502 2v73A 191 0.07928 1sacA 204 0.08773 b.29.1.5 24237 1d2sA 170 0.1132 b.29.1.4 24221 1uaiA 224 0.1526 b.29.1.18 107761 2a6vA 226 0.2561 b.29.1.13 126312 2a6zA 222 0.3439 b.29.1.13 126319 3flpA 217 0.3456 1yrzA 528 0.3502 b.29.1.23,b.67.2.1 123948,123949 2durA 253 0.4318 2erfA 209 0.7151 b.29.1.4 132287 1gv9A 260 0.7473 b.29.1.13 70596 2uurA 245 0.7523 2vxrA 482 1.232 2w08A 204 1.407 1bkzA 135 2.461 b.29.1.3 24202 2w68A 195 2.771 1a8dA 452 3.390 b.29.1.6,b.42.4.2 24262,25607 3b9cA 144 3.683 2vu9A 444 3.804 3hmyA 450 4.254 1gwmA 153 4.347 b.18.1.19 83348 1is3A 135 4.781 b.29.1.3 76773 1wcuA 153 4.996 2sliA 679 5.764 b.29.1.9,b.68.1.1 24274,27611 1y2tA 142 6.802 b.97.1.2 116407 1hdkA 141 9.360 b.29.1.3 65807 1kxoA 184 12.22 b.60.1.1 84475 1n1tA 641 12.82 b.29.1.15,b.68.1.1 79821,79822 1ms9A 648 14.88 b.29.1.15,b.68.1.1 85088,85089 1c1lA 136 15.35 b.29.1.3 24219 1c3hA 137 15.61 b.22.1.1 90405 2c43A 323 16.39 1a8d 452 17.20 1o91A 178 17.71 b.22.1.1 92656 2f6eA 127 18.42 2wkkA 150 19.42 2r0hA 164 19.59 1x99A 145 20.00 b.97.1.2 114978 1yifA 533 20.10 b.29.1.23,b.67.2.1 123283,123284 3ks7A 397 20.91 3ecqA 1531 21.22 1w6nA 134 21.95 b.29.1.3 114275 2wnwA 447 22.72 3dhvA 512 23.77 1gu3A 149 24.87 b.18.1.14 76350 2wnxA 170 25.74 1x89A 178 26.26 b.60.1.1 121799 3fceA 512 26.39 1oacA 727 26.78 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1a78A 134 27.63 b.29.1.3 24212 2bibA 547 27.89 b.109.1.1,d.157.1.8 128581,128582 2ofcA 142 28.05 1wz9A 375 28.15 2w5fA 540 29.58 2fnjA 226 30.05 b.29.1.22 133818 3dszA 186 33.21 2wj7A 94 33.71 2p0iA 456 36.38 2rcaA 292 36.88 3cz6A 168 37.11 2zl8A 638 39.52 b.30.2.1,d.17.2.1,d.17.2.1 154620,154621,154622 1w2tA 432 39.94 b.29.1.19,b.67.2.3 120607,120608 1sltA 134 41.41 b.29.1.3 24186 3iteA 562 41.62 1gr3A 160 42.29 b.22.1.1 65476 1lj5A 379 44.38 e.1.1.1 73928 1hleA 345 45.62 e.1.1.1 42618 1od3A 168 46.85 b.18.1.10 86825 1oc0A 379 47.29 e.1.1.1 86790 2acoA 173 47.69 1pb7A 292 48.64 c.94.1.1 88025 1jrrA 382 48.83 e.1.1.1 63256 2a5sA 284 50.36 c.94.1.1 126178 1j83A 180 50.58 b.18.1.12 66430 2arrA 382 51.67 3fgqA 397 52.04 1w6gA 646 52.24 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 2d1wA 638 52.53 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 2zglA 167 53.41 1pg4A 652 53.55 e.23.1.1 88067 1rjoA 646 53.56 b.30.2.1,d.17.2.1,d.17.2.1 111832,111833,111834 2j8gA 339 53.94 b.109.1.1,c.1.8.8 147915,147916 2vtcA 249 54.93 2kd2A 94 54.96 1uypA 432 55.77 b.29.1.19,b.67.2.3 100176,100177 3f95A 193 56.18 2eceA 462 57.30 2pmvA 399 57.48 1tf4A 605 59.06 a.102.1.2,b.2.2.2 18827,22393 1uldA 150 59.64 b.29.1.3 99545 3kf5A 512 59.77 2zexA 147 64.20 2w87A 139 64.97 2yv8A 164 66.14 2h4pA 394 69.03 3emwA 217 69.54 1qlpA 394 70.00 e.1.1.1 42628 4bcl 366 70.04 1epwA 1290 70.70 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2v05A 311 71.42 1uhgA 385 73.89 e.1.1.1 88491 2oqeA 660 73.90 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1uxzA 131 74.07 b.18.1.10 100170 1umhA 184 74.55 b.18.1.21 99605 1mkaA 171 74.56 d.38.1.2 38543 2hsjA 214 75.51 c.23.10.3 147389 2zhnA 148 78.13 1kjlA 146 78.71 b.29.1.3 118689 1guiA 155 78.85 b.18.1.14 76351 2jk9A 212 78.88 3hi7A 731 79.44 2cy5A 140 79.71 b.55.1.2 131018 3ikwA 374 82.37 1kjvA 284 85.76 b.1.1.2,d.19.1.1 77421,77422 3loyA 633 86.09 1oeyA 83 86.79 d.15.2.2 92800 1dyoA 160 87.38 b.18.1.7 23771 1z8yA 290 87.53