# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 6.08e-20 3hbkA 245 2.04e-18 3immA 201 1.08e-15 1dypA 271 3.03e-12 b.29.1.2 24185 2vy0A 264 3.66e-12 2ayh 214 4.24e-12 2ayhA 214 5.66e-12 b.29.1.2 24172 2hykA 245 1.05e-11 3juuA 280 1.54e-11 1o4yA 288 2.22e-11 b.29.1.2 92473 1gbgA 214 2.51e-11 b.29.1.2 24171 1gbg 214 3.75e-11 2uwaA 274 1.06e-10 3ilfA 268 1.13e-10 3dgtA 280 1.29e-10 1upsA 420 2.30e-10 b.29.1.2,b.42.2.3 113394,113395 2w39A 298 1.71e-09 2cl2A 298 4.84e-09 3hr9A 241 5.70e-09 1umzA 278 9.76e-09 b.29.1.2 99639 1mveA 243 1.24e-08 b.29.1.2 85140 1cpnA 208 2.66e-08 b.29.1.2 24175 1ajoA 214 3.47e-05 b.29.1.2 24179 1ajkA 214 3.99e-05 b.29.1.2 24176 1dykA 394 0.005639 b.29.1.4,b.29.1.4 24223,24224 2jd4A 383 0.03390 1oq1A 223 0.04091 b.29.1.17 93408 2zzjA 238 0.04653 2wjsA 608 0.07735 1h30A 422 0.1389 b.29.1.4,b.29.1.4 76604,76605 1c4rA 182 0.1490 b.29.1.4 24229 1qu0A 191 0.1507 b.29.1.4 24225 3b3qE 197 0.1711 b.29.1.4 154813 1d2sA 170 0.1986 b.29.1.4 24221 3gneA 252 0.2008 2h0bA 184 0.2116 3bodA 178 0.2946 2v73A 191 0.3113 2uurA 245 0.3434 2cwsA 237 0.3810 2r16A 182 0.4327 1sacA 204 0.5077 b.29.1.5 24237 2vu9A 444 0.5250 1pz7A 204 0.5925 b.29.1.4 95405 1uaiA 224 0.6961 b.29.1.18 107761 2durA 253 0.8200 2a6vA 226 1.306 b.29.1.13 126312 2erfA 209 1.358 b.29.1.4 132287 2vxrA 482 1.393 3hmyA 450 1.581 3flpA 217 1.653 1a8dA 452 2.485 b.29.1.6,b.42.4.2 24262,25607 2a6zA 222 2.727 b.29.1.13 126319 1yrzA 528 2.787 b.29.1.23,b.67.2.1 123948,123949 1gv9A 260 3.340 b.29.1.13 70596 1y4wA 518 4.523 b.29.1.19,b.67.2.3 116470,116471 2w08A 204 4.907 3kf5A 512 5.978 1w2tA 432 6.539 b.29.1.19,b.67.2.3 120607,120608 1epwA 1290 8.387 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1a8d 452 9.683 1ms9A 648 9.865 b.29.1.15,b.68.1.1 85088,85089 1is3A 135 10.82 b.29.1.3 76773 3kf3A 509 11.00 1uypA 432 11.95 b.29.1.19,b.67.2.3 100176,100177 1bkzA 135 11.99 b.29.1.3 24202 3b9cA 144 12.88 3hi7A 731 13.06 1hdkA 141 14.51 b.29.1.3 65807 1y2tA 142 15.36 b.97.1.2 116407 2wnxA 170 15.62 1x99A 145 15.65 b.97.1.2 114978 2w68A 195 16.04 2eceA 462 16.79 1n1tA 641 18.60 b.29.1.15,b.68.1.1 79821,79822 2bibA 547 21.13 b.109.1.1,d.157.1.8 128581,128582 1shsA 147 21.91 b.15.1.1 23675 1i4uA 181 22.04 b.60.1.1 61732 1gwmA 153 25.74 b.18.1.19 83348 1x89A 178 26.38 b.60.1.1 121799 2sliA 679 28.74 b.29.1.9,b.68.1.1 24274,27611 3hikA 237 28.75 3hihA 223 29.55 1oacA 727 30.04 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 3dszA 186 31.04 2ofcA 142 31.42 2j8gA 339 32.21 b.109.1.1,c.1.8.8 147915,147916 1n9eA 787 32.58 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1w6nA 134 33.34 b.29.1.3 114275 1yifA 533 33.34 b.29.1.23,b.67.2.1 123283,123284 2r0hA 164 33.77 3ks7A 397 34.38 2wnwA 447 37.72 1j83A 180 39.72 b.18.1.12 66430 2zl8A 638 40.65 b.30.2.1,d.17.2.1,d.17.2.1 154620,154621,154622 2f6eA 127 40.69 1kxoA 184 43.97 b.60.1.1 84475 3hrpA 409 46.67 3emwA 217 46.78 2zglA 167 48.53 2rc8A 294 49.05 2c43A 323 49.27 1od3A 168 51.37 b.18.1.10 86825 3loyA 633 51.71 1c1lA 136 52.41 b.29.1.3 24219 3bvxA 1045 52.96 a.8.3.1,b.30.5.6,c.6.2.1 155676,155677,155678 1umwA 237 53.31 d.223.1.2,d.223.1.2 99631,99632 2oqeA 660 54.08 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1s1dA 331 55.03 b.67.3.1 98344 3d3iA 761 55.30 2wewA 172 55.31 2oasA 436 59.77 2a6sA 84 60.34 d.298.1.1 126305 1o91A 178 60.36 b.22.1.1 92656 3dtqA 186 63.58 1kbvA 327 64.72 b.6.1.3,b.6.1.3 68395,68396 2rcaA 292 65.64 3silA 379 67.43 b.68.1.1 27542 1tf4A 605 70.35 a.102.1.2,b.2.2.2 18827,22393 2cy5A 140 73.74 b.55.1.2 131018 1guiA 155 78.00 b.18.1.14 76351 2hyxA 352 80.29 1jk7A 323 82.86 d.159.1.3 63144 1mt6A 280 84.74 b.76.2.1,b.85.7.1 79446,79447 1y7mA 164 84.91 b.160.1.1,d.7.1.1 122696,122697 2wkkA 150 86.82 1a78A 134 89.30 b.29.1.3 24212