# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 2.09e-16 3hbkA 245 3.62e-15 3immA 201 1.83e-12 1dypA 271 1.25e-09 b.29.1.2 24185 2ayhA 214 2.83e-09 b.29.1.2 24172 2ayh 214 2.85e-09 2vy0A 264 3.35e-09 2hykA 245 4.14e-09 3dgtA 280 4.76e-09 1gbgA 214 6.27e-09 b.29.1.2 24171 1gbg 214 6.91e-09 1o4yA 288 1.06e-08 b.29.1.2 92473 3juuA 280 1.67e-08 2uwaA 274 2.02e-08 3ilfA 268 2.55e-08 1upsA 420 3.54e-08 b.29.1.2,b.42.2.3 113394,113395 2w39A 298 1.24e-07 2cl2A 298 6.78e-07 1umzA 278 8.94e-07 b.29.1.2 99639 3hr9A 241 2.03e-06 1cpnA 208 2.63e-06 b.29.1.2 24175 1mveA 243 1.14e-05 b.29.1.2 85140 1ajkA 214 0.001377 b.29.1.2 24176 1ajoA 214 0.001591 b.29.1.2 24179 1dykA 394 0.03374 b.29.1.4,b.29.1.4 24223,24224 1oq1A 223 0.05115 b.29.1.17 93408 2zzjA 238 0.08075 2wjsA 608 0.1076 2jd4A 383 0.2228 1h30A 422 0.3607 b.29.1.4,b.29.1.4 76604,76605 3gneA 252 0.8253 1c4rA 182 1.068 b.29.1.4 24229 2a6vA 226 1.150 b.29.1.13 126312 3bodA 178 1.399 3b3qE 197 1.455 b.29.1.4 154813 2h0bA 184 1.567 2r16A 182 1.890 2v73A 191 2.230 1d2sA 170 2.298 b.29.1.4 24221 2uurA 245 2.303 1pz7A 204 2.304 b.29.1.4 95405 2cwsA 237 3.144 2durA 253 3.147 1sacA 204 3.173 b.29.1.5 24237 1qu0A 191 3.640 b.29.1.4 24225 1uaiA 224 5.203 b.29.1.18 107761 3k1qA 1299 5.566 2erfA 209 9.157 b.29.1.4 132287 1t3tA 1303 9.872 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 2a6zA 222 10.83 b.29.1.13 126319 1y4wA 518 16.02 b.29.1.19,b.67.2.3 116470,116471 1yrzA 528 16.38 b.29.1.23,b.67.2.1 123948,123949 1g5hA 454 17.66 c.51.1.1,d.104.1.1 60270,60271 3hmyA 450 18.74 2w08A 204 19.21 3d3iA 761 19.46 2ih8A 559 21.04 b.6.1.3,b.6.1.3,b.6.1.3 137407,137408,137409 1oacA 727 21.39 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1gv9A 260 23.79 b.29.1.13 70596 3husC 311 25.09 1i4uA 181 27.99 b.60.1.1 61732 2vxrA 482 29.14 3czgA 644 29.21 3efmA 707 30.99 3fhhA 640 32.47 2rc8A 294 35.61 3bc9A 599 36.95 2eceA 462 36.99 3b7fA 394 37.69 3gueA 484 38.20 1y2tA 142 38.41 b.97.1.2 116407 1j83A 180 39.83 b.18.1.12 66430 1w6gA 646 40.09 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 1epwA 1290 40.79 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1uypA 432 40.83 b.29.1.19,b.67.2.3 100176,100177 2wdcA 562 44.76 2yv8A 164 45.17 3hi7A 731 45.65 2w68A 195 47.19 1xdpA 687 48.20 a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4 121896,121897,121898,121899 3ks7A 397 49.83 1w6nA 134 49.88 b.29.1.3 114275 1x99A 145 50.03 b.97.1.2 114978 2wnxA 170 50.64 2rcaA 292 50.87 1s1dA 331 51.25 b.67.3.1 98344 2vh4A 381 51.74 1kbvA 327 52.61 b.6.1.3,b.6.1.3 68395,68396 2zl8A 638 54.10 b.30.2.1,d.17.2.1,d.17.2.1 154620,154621,154622 2i2cA 272 54.48 1g5aA 628 55.84 b.71.1.1,c.1.8.1 65152,65153 3silA 379 56.67 b.68.1.1 27542 1q47A 495 57.14 b.69.12.1 104532 1x89A 178 58.51 b.60.1.1 121799 1is3A 135 58.60 b.29.1.3 76773 1ji1A 637 59.42 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 1uwcA 261 59.87 c.69.1.17 100101 2po4A 1104 63.37 3b9cA 144 63.81 3flpA 217 63.96 3kf5A 512 64.45 2v05A 311 66.36 1x9lA 149 67.91 b.2.10.1 109528 3emwA 217 68.05 3coxA 507 68.08 c.3.1.2,d.16.1.1 30332,37863 3f6tA 533 68.53 1gqeA 365 69.04 e.38.1.1 70351 1gwmA 153 69.94 b.18.1.19 83348 3dszA 186 71.28 1r13A 148 71.97 d.169.1.1,h.1.1.1 96782,96783 1lnsA 763 72.59 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 3gdcA 288 72.81 3grhA 422 74.01 1n4wA 504 75.21 c.3.1.2,d.16.1.1 91676,91677 2d1wA 638 76.28 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 3hikA 237 76.35 1od3A 168 76.36 b.18.1.10 86825 1hdkA 141 78.53 b.29.1.3 65807 1ciyA 590 80.17 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1pwbA 177 82.01 d.169.1.1,h.1.1.1 95212,95213 2hyxA 352 82.99 1llfA 534 84.66 c.69.1.17 78094 1tu5A 746 86.20 2ofcA 142 87.33 1mzyA 333 87.83 b.6.1.3,b.6.1.3 103848,103849 1gkzA 388 88.19 a.29.5.1,d.122.1.4 65268,65269