# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 4.11e-20 3hbkA 245 1.05e-18 3immA 201 1.66e-15 1dypA 271 3.16e-12 b.29.1.2 24185 2vy0A 264 4.64e-12 2ayhA 214 7.85e-12 b.29.1.2 24172 2ayh 214 8.58e-12 2hykA 245 1.21e-11 1o4yA 288 1.75e-11 b.29.1.2 92473 3juuA 280 2.30e-11 1gbgA 214 5.18e-11 b.29.1.2 24171 1gbg 214 6.58e-11 3dgtA 280 8.09e-11 3ilfA 268 1.09e-10 2uwaA 274 1.09e-10 1upsA 420 2.49e-10 b.29.1.2,b.42.2.3 113394,113395 2w39A 298 1.36e-09 2cl2A 298 4.13e-09 3hr9A 241 7.45e-09 1umzA 278 1.01e-08 b.29.1.2 99639 1mveA 243 1.50e-08 b.29.1.2 85140 1cpnA 208 3.79e-08 b.29.1.2 24175 1ajoA 214 3.57e-05 b.29.1.2 24179 1ajkA 214 9.70e-05 b.29.1.2 24176 1dykA 394 0.01015 b.29.1.4,b.29.1.4 24223,24224 2zzjA 238 0.05254 2jd4A 383 0.07740 1oq1A 223 0.1005 b.29.1.17 93408 2wjsA 608 0.1302 3gneA 252 0.1608 1h30A 422 0.1698 b.29.1.4,b.29.1.4 76604,76605 1c4rA 182 0.2412 b.29.1.4 24229 3b3qE 197 0.2619 b.29.1.4 154813 1qu0A 191 0.2890 b.29.1.4 24225 2h0bA 184 0.3597 3bodA 178 0.3943 2v73A 191 0.4249 1d2sA 170 0.5143 b.29.1.4 24221 2r16A 182 0.5867 2vu9A 444 0.6146 2cwsA 237 0.7261 1sacA 204 0.8246 b.29.1.5 24237 2uurA 245 0.8481 1pz7A 204 0.8948 b.29.1.4 95405 2durA 253 1.231 2a6vA 226 1.421 b.29.1.13 126312 3hmyA 450 1.741 2erfA 209 2.266 b.29.1.4 132287 1uaiA 224 2.291 b.29.1.18 107761 1yrzA 528 2.338 b.29.1.23,b.67.2.1 123948,123949 3flpA 217 2.561 2a6zA 222 2.952 b.29.1.13 126319 2vxrA 482 2.988 1a8dA 452 3.338 b.29.1.6,b.42.4.2 24262,25607 1epwA 1290 4.242 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1gv9A 260 6.688 b.29.1.13 70596 2w08A 204 6.708 2eceA 462 8.063 3kf5A 512 8.182 1a8d 452 8.789 1i4uA 181 11.32 b.60.1.1 61732 1oacA 727 13.06 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1y4wA 518 15.79 b.29.1.19,b.67.2.3 116470,116471 3hi7A 731 16.45 1x99A 145 17.13 b.97.1.2 114978 1y2tA 142 18.75 b.97.1.2 116407 1is3A 135 20.55 b.29.1.3 76773 2w68A 195 21.54 3kf3A 509 24.54 1n9eA 787 25.28 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 3hikA 237 27.57 3emwA 217 27.73 1w2tA 432 28.52 b.29.1.19,b.67.2.3 120607,120608 3dszA 186 28.80 2wnxA 170 29.38 3b9cA 144 29.42 1j83A 180 30.18 b.18.1.12 66430 2wnwA 447 30.57 1ms9A 648 32.16 b.29.1.15,b.68.1.1 85088,85089 1yifA 533 33.23 b.29.1.23,b.67.2.1 123283,123284 1gwmA 153 33.25 b.18.1.19 83348 3hihA 223 33.55 1x89A 178 33.66 b.60.1.1 121799 3ks7A 397 33.79 1uypA 432 35.52 b.29.1.19,b.67.2.3 100176,100177 1qwnA 1045 35.67 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1od3A 168 36.81 b.18.1.10 86825 1bkzA 135 38.60 b.29.1.3 24202 2ofcA 142 38.90 1hdkA 141 39.71 b.29.1.3 65807 2rc8A 294 41.95 3bvxA 1045 42.36 a.8.3.1,b.30.5.6,c.6.2.1 155676,155677,155678 2oqeA 660 42.61 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1shsA 147 43.13 b.15.1.1 23675 1n1tA 641 43.53 b.29.1.15,b.68.1.1 79821,79822 2wewA 172 44.72 2bibA 547 44.94 b.109.1.1,d.157.1.8 128581,128582 2f6eA 127 48.12 2fnjA 226 49.45 b.29.1.22 133818 2rcaA 292 49.49 1umwA 237 50.05 d.223.1.2,d.223.1.2 99631,99632 1jhnA 424 51.19 b.104.1.1,b.29.1.12 66722,70060 2c43A 323 51.80 1mt6A 280 52.32 b.76.2.1,b.85.7.1 79446,79447 1o91A 178 54.21 b.22.1.1 92656 1jk7A 323 60.33 d.159.1.3 63144 2hyxA 352 60.85 2zl8A 638 61.55 b.30.2.1,d.17.2.1,d.17.2.1 154620,154621,154622 1kt6A 183 63.71 b.60.1.1 84466 3hrpA 409 64.26 1g5aA 628 64.36 b.71.1.1,c.1.8.1 65152,65153 2blnA 305 65.72 b.46.1.1,c.65.1.1 128734,128735 1u0tA 307 65.90 e.52.1.1 107567 1kxoA 184 66.95 b.60.1.1 84475 1y0yA 353 67.92 b.49.3.1,c.56.5.4 122514,122515 2j8gA 339 70.44 b.109.1.1,c.1.8.8 147915,147916 1s1dA 331 70.57 b.67.3.1 98344 1oc0A 379 70.87 e.1.1.1 86790 1w6nA 134 71.28 b.29.1.3 114275 3loyA 633 73.46 3kcgI 432 74.63 2w5fA 540 74.87 1guiA 155 75.85 b.18.1.14 76351 3dtqA 186 80.88 1kbvA 327 85.09 b.6.1.3,b.6.1.3 68395,68396 1gmeA 151 87.26 b.15.1.1 65305 3ikwA 374 88.01