# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 1.16e-17 3hbkA 245 1.68e-16 3immA 201 1.26e-13 1dypA 271 2.00e-10 b.29.1.2 24185 2vy0A 264 2.23e-10 2ayhA 214 2.54e-10 b.29.1.2 24172 2ayh 214 3.22e-10 2hykA 245 6.54e-10 1o4yA 288 6.79e-10 b.29.1.2 92473 3juuA 280 8.69e-10 1gbgA 214 1.49e-09 b.29.1.2 24171 1gbg 214 2.30e-09 3dgtA 280 2.84e-09 2uwaA 274 6.13e-09 3ilfA 268 6.27e-09 1upsA 420 8.35e-09 b.29.1.2,b.42.2.3 113394,113395 2w39A 298 7.30e-08 2cl2A 298 1.80e-07 3hr9A 241 2.10e-07 1umzA 278 3.48e-07 b.29.1.2 99639 1mveA 243 4.25e-07 b.29.1.2 85140 1cpnA 208 5.42e-07 b.29.1.2 24175 1ajoA 214 0.000433 b.29.1.2 24179 1ajkA 214 0.000602 b.29.1.2 24176 1dykA 394 0.06847 b.29.1.4,b.29.1.4 24223,24224 2zzjA 238 0.2083 2wjsA 608 0.2860 1oq1A 223 0.3340 b.29.1.17 93408 3gneA 252 0.3917 2jd4A 383 0.4583 1h30A 422 0.8607 b.29.1.4,b.29.1.4 76604,76605 3b3qE 197 0.8894 b.29.1.4 154813 1qu0A 191 1.440 b.29.1.4 24225 2h0bA 184 1.608 1c4rA 182 1.777 b.29.1.4 24229 2v73A 191 1.790 2uurA 245 2.125 2cwsA 237 2.334 3bodA 178 2.731 2vu9A 444 2.877 2r16A 182 2.913 1sacA 204 3.433 b.29.1.5 24237 2a6vA 226 3.856 b.29.1.13 126312 1d2sA 170 4.085 b.29.1.4 24221 1pz7A 204 4.503 b.29.1.4 95405 2durA 253 4.803 3hmyA 450 6.816 2a6zA 222 7.015 b.29.1.13 126319 2erfA 209 7.503 b.29.1.4 132287 1a8dA 452 7.854 b.29.1.6,b.42.4.2 24262,25607 3flpA 217 7.933 2vxrA 482 8.197 1uaiA 224 9.408 b.29.1.18 107761 1i4uA 181 12.44 b.60.1.1 61732 2eceA 462 15.01 1gv9A 260 17.20 b.29.1.13 70596 1yrzA 528 21.80 b.29.1.23,b.67.2.1 123948,123949 2w08A 204 22.63 2wnwA 447 25.59 1y4wA 518 29.01 b.29.1.19,b.67.2.3 116470,116471 3kf5A 512 31.73 2rc8A 294 35.35 1a8d 452 35.81 1y2tA 142 36.81 b.97.1.2 116407 1x89A 178 39.84 b.60.1.1 121799 2rcaA 292 41.37 1is3A 135 41.85 b.29.1.3 76773 1x99A 145 42.85 b.97.1.2 114978 1epwA 1290 43.58 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1kbvA 327 44.59 b.6.1.3,b.6.1.3 68395,68396 2wnxA 170 49.61 3emwA 217 51.47 3kf3A 509 60.74 1gwmA 153 61.53 b.18.1.19 83348 2oasA 436 61.87 1jk7A 323 61.96 d.159.1.3 63144 1oacA 727 63.71 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 2ofcA 142 65.55 3dszA 186 65.86 3ks7A 397 65.87 2fnjA 226 66.73 b.29.1.22 133818 1j83A 180 66.81 b.18.1.12 66430 1shsA 147 71.90 b.15.1.1 23675 3ei3B 383 75.54 1uypA 432 76.97 b.29.1.19,b.67.2.3 100176,100177 1gmeA 151 79.06 b.15.1.1 65305 2w68A 195 79.22 1qwnA 1045 79.39 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 2wewA 172 79.47 2bolA 314 81.67 3kcgI 432 81.71 1gqeA 365 82.98 e.38.1.1 70351 3hi7A 731 83.72 2hyxA 352 83.81 1w2tA 432 84.79 b.29.1.19,b.67.2.3 120607,120608 1mt6A 280 85.05 b.76.2.1,b.85.7.1 79446,79447 3hihA 223 85.09 3psgA 370 85.54 b.50.1.2 26841 2i2cA 272 86.93 1s1dA 331 88.28 b.67.3.1 98344 1o91A 178 88.64 b.22.1.1 92656 2vvfA 269 88.82