# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 8.04e-20 3hbkA 245 1.60e-18 3immA 201 1.74e-15 1dypA 271 6.72e-12 b.29.1.2 24185 2vy0A 264 7.89e-12 2ayhA 214 8.91e-12 b.29.1.2 24172 2ayh 214 1.42e-11 2hykA 245 2.04e-11 1o4yA 288 5.46e-11 b.29.1.2 92473 3juuA 280 6.05e-11 1gbgA 214 7.46e-11 b.29.1.2 24171 1gbg 214 1.15e-10 3dgtA 280 1.73e-10 1upsA 420 2.87e-10 b.29.1.2,b.42.2.3 113394,113395 2uwaA 274 3.36e-10 3ilfA 268 4.32e-10 2w39A 298 2.21e-09 2cl2A 298 7.71e-09 3hr9A 241 8.69e-09 1mveA 243 2.12e-08 b.29.1.2 85140 1umzA 278 2.36e-08 b.29.1.2 99639 1cpnA 208 4.27e-08 b.29.1.2 24175 1ajoA 214 5.88e-05 b.29.1.2 24179 1ajkA 214 7.87e-05 b.29.1.2 24176 1dykA 394 0.01575 b.29.1.4,b.29.1.4 24223,24224 2wjsA 608 0.07714 2jd4A 383 0.07996 2zzjA 238 0.09045 3gneA 252 0.1233 1oq1A 223 0.1321 b.29.1.17 93408 3b3qE 197 0.2448 b.29.1.4 154813 1h30A 422 0.2698 b.29.1.4,b.29.1.4 76604,76605 1qu0A 191 0.3225 b.29.1.4 24225 3bodA 178 0.4774 1c4rA 182 0.4955 b.29.1.4 24229 1d2sA 170 0.6383 b.29.1.4 24221 2cwsA 237 0.6573 2v73A 191 0.6625 1sacA 204 0.7026 b.29.1.5 24237 2h0bA 184 0.7212 2r16A 182 0.7698 2uurA 245 0.9838 2vu9A 444 1.420 1pz7A 204 1.449 b.29.1.4 95405 3flpA 217 1.876 2durA 253 2.312 2erfA 209 2.723 b.29.1.4 132287 3hmyA 450 2.882 1uaiA 224 3.014 b.29.1.18 107761 2a6vA 226 3.196 b.29.1.13 126312 1a8dA 452 3.827 b.29.1.6,b.42.4.2 24262,25607 2vxrA 482 4.304 2a6zA 222 5.662 b.29.1.13 126319 3kf5A 512 6.812 1gv9A 260 6.813 b.29.1.13 70596 1y4wA 518 7.094 b.29.1.19,b.67.2.3 116470,116471 2w08A 204 7.336 1a8d 452 11.45 1i4uA 181 11.88 b.60.1.1 61732 3hi7A 731 14.91 1yrzA 528 15.50 b.29.1.23,b.67.2.1 123948,123949 1w2tA 432 16.06 b.29.1.19,b.67.2.3 120607,120608 3kf3A 509 16.53 1epwA 1290 16.69 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1y2tA 142 19.71 b.97.1.2 116407 2rc8A 294 24.21 1gwmA 153 24.41 b.18.1.19 83348 3hikA 237 27.88 1x99A 145 29.37 b.97.1.2 114978 2wnwA 447 29.72 1od3A 168 32.25 b.18.1.10 86825 2w68A 195 32.46 2wnxA 170 32.85 1oacA 727 32.91 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1s1dA 331 33.68 b.67.3.1 98344 1bkzA 135 33.91 b.29.1.3 24202 3hihA 223 34.41 1ms9A 648 34.53 b.29.1.15,b.68.1.1 85088,85089 2rcaA 292 35.35 1kbvA 327 35.98 b.6.1.3,b.6.1.3 68395,68396 3ks7A 397 36.24 1uypA 432 38.25 b.29.1.19,b.67.2.3 100176,100177 1n1tA 641 38.25 b.29.1.15,b.68.1.1 79821,79822 3b9cA 144 38.69 1is3A 135 40.88 b.29.1.3 76773 2eceA 462 41.05 1x89A 178 41.76 b.60.1.1 121799 2ofcA 142 41.79 1hdkA 141 42.88 b.29.1.3 65807 3dszA 186 43.76 2f6eA 127 43.81 3emwA 217 44.17 1o91A 178 45.03 b.22.1.1 92656 1shsA 147 45.34 b.15.1.1 23675 2bibA 547 45.52 b.109.1.1,d.157.1.8 128581,128582 2sliA 679 50.16 b.29.1.9,b.68.1.1 24274,27611 1mt6A 280 52.66 b.76.2.1,b.85.7.1 79446,79447 2c43A 323 52.78 2vvfA 269 52.89 2wewA 172 55.62 1y0yA 353 55.86 b.49.3.1,c.56.5.4 122514,122515 1jk7A 323 58.95 d.159.1.3 63144 1gmeA 151 62.15 b.15.1.1 65305 1n9eA 787 63.67 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1oc0A 379 66.87 e.1.1.1 86790 2vtcA 249 71.22 2oasA 436 73.79 3loyA 633 74.76 3silA 379 74.97 b.68.1.1 27542 2hyxA 352 76.36 2i2cA 272 76.92 1kxoA 184 79.74 b.60.1.1 84475 1umwA 237 80.71 d.223.1.2,d.223.1.2 99631,99632 2an1A 292 82.75 3kcgI 432 82.83 3hrpA 409 83.07 3ikwA 374 84.19 1j83A 180 85.96 b.18.1.12 66430 2wj7A 94 88.74 3kxwA 590 88.88