# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 4.11e-25 3hbkA 245 4.86e-24 3immA 201 2.47e-19 2vy0A 264 4.26e-15 2hykA 245 7.03e-15 2ayh 214 7.69e-15 2ayhA 214 8.39e-15 b.29.1.2 24172 1o4yA 288 4.16e-14 b.29.1.2 92473 1gbg 214 6.66e-14 1gbgA 214 8.83e-14 b.29.1.2 24171 3juuA 280 1.01e-13 1dypA 271 1.26e-13 b.29.1.2 24185 3dgtA 280 1.54e-13 1upsA 420 1.85e-12 b.29.1.2,b.42.2.3 113394,113395 2uwaA 274 9.40e-12 3ilfA 268 1.78e-11 2w39A 298 7.27e-11 1cpnA 208 8.59e-11 b.29.1.2 24175 2cl2A 298 1.89e-10 3hr9A 241 2.35e-10 1mveA 243 4.39e-10 b.29.1.2 85140 1umzA 278 1.68e-09 b.29.1.2 99639 1ajoA 214 1.29e-06 b.29.1.2 24179 1ajkA 214 1.87e-06 b.29.1.2 24176 2zzjA 238 0.006840 1oq1A 223 0.008170 b.29.1.17 93408 1c4rA 182 0.01835 b.29.1.4 24229 1dykA 394 0.02331 b.29.1.4,b.29.1.4 24223,24224 2wjsA 608 0.03389 1qu0A 191 0.03687 b.29.1.4 24225 1h30A 422 0.03761 b.29.1.4,b.29.1.4 76604,76605 3b3qE 197 0.03890 b.29.1.4 154813 2h0bA 184 0.04734 3gneA 252 0.05828 2jd4A 383 0.06496 3bodA 178 0.08497 1sacA 204 0.1023 b.29.1.5 24237 2r16A 182 0.1036 1d2sA 170 0.1819 b.29.1.4 24221 2a6zA 222 0.2433 b.29.1.13 126319 2v73A 191 0.3822 2cwsA 237 0.3966 2a6vA 226 0.4321 b.29.1.13 126312 1pz7A 204 1.054 b.29.1.4 95405 1uaiA 224 1.551 b.29.1.18 107761 2uurA 245 2.253 2erfA 209 2.547 b.29.1.4 132287 2durA 253 3.075 2w08A 204 3.302 3flpA 217 3.696 2vxrA 482 3.768 2vu9A 444 4.159 1gv9A 260 4.734 b.29.1.13 70596 1gwmA 153 7.809 b.18.1.19 83348 1a8dA 452 8.023 b.29.1.6,b.42.4.2 24262,25607 1wcuA 153 8.093 2w68A 195 12.56 3b9cA 144 13.39 1is3A 135 15.47 b.29.1.3 76773 1pb7A 292 17.07 c.94.1.1 88025 3kdhA 190 19.18 2a5sA 284 21.61 c.94.1.1 126178 2wnwA 447 23.71 1yrzA 528 24.99 b.29.1.23,b.67.2.1 123948,123949 1gkzA 388 25.28 a.29.5.1,d.122.1.4 65268,65269 1bkzA 135 25.98 b.29.1.3 24202 3k90A 193 27.73 2sliA 679 28.06 b.29.1.9,b.68.1.1 24274,27611 1tf4A 605 36.04 a.102.1.2,b.2.2.2 18827,22393 3emwA 217 37.02 1y2tA 142 38.14 b.97.1.2 116407 1uwwA 191 38.33 b.18.1.23 108079 3kdjA 202 44.01 1gqeA 365 45.15 e.38.1.1 70351 3f95A 193 45.64 3jrsA 208 46.58 1hdkA 141 46.68 b.29.1.3 65807 3k3kA 211 51.86 2hyxA 352 53.77 2e0aA 394 53.99 1ji1A 637 54.03 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 3eghC 170 54.79 2zglA 167 54.93 2c43A 323 56.44 1o91A 178 57.51 b.22.1.1 92656 3m6sA 331 58.34 3dhvA 512 61.92 2hydA 578 62.84 c.37.1.12,f.37.1.1 136875,136876 1x99A 145 63.87 b.97.1.2 114978 1qwnA 1045 64.02 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1g5aA 628 64.11 b.71.1.1,c.1.8.1 65152,65153 2p0iA 456 65.29 3bzhA 194 66.54 1a78A 134 67.71 b.29.1.3 24212 2wnxA 170 69.14 3jrqB 186 72.53 2acoA 173 73.68 1n1tA 641 75.75 b.29.1.15,b.68.1.1 79821,79822 3hmyA 450 76.77 1ieaB 228 76.98 b.1.1.2,d.19.1.1 21632,38206 1ru7A 327 79.80 b.19.1.2 97837 1wmxA 205 82.35 b.18.1.24 109418 2btzA 394 84.06 1i4uA 181 84.73 b.60.1.1 61732 2r0hA 164 86.05 2b9lA 394 86.70 2ip2A 334 87.65 1od3A 168 88.77 b.18.1.10 86825