# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 6.63e-18 3hbkA 245 6.47e-17 3immA 201 9.10e-14 2vy0A 264 3.90e-10 1dypA 271 4.78e-10 b.29.1.2 24185 3juuA 280 9.23e-10 2hykA 245 1.20e-09 2ayhA 214 1.32e-09 b.29.1.2 24172 2ayh 214 1.35e-09 1o4yA 288 1.71e-09 b.29.1.2 92473 3dgtA 280 6.50e-09 1gbg 214 6.80e-09 1gbgA 214 6.86e-09 b.29.1.2 24171 1upsA 420 8.38e-09 b.29.1.2,b.42.2.3 113394,113395 3ilfA 268 3.30e-08 2uwaA 274 3.43e-08 2w39A 298 1.21e-07 2cl2A 298 2.81e-07 3hr9A 241 1.24e-06 1cpnA 208 1.35e-06 b.29.1.2 24175 1mveA 243 1.51e-06 b.29.1.2 85140 1umzA 278 3.06e-06 b.29.1.2 99639 1ajoA 214 0.000252 b.29.1.2 24179 1ajkA 214 0.001606 b.29.1.2 24176 1oq1A 223 0.1030 b.29.1.17 93408 3b3qE 197 0.1185 b.29.1.4 154813 2zzjA 238 0.1445 1dykA 394 0.2780 b.29.1.4,b.29.1.4 24223,24224 1c4rA 182 0.3007 b.29.1.4 24229 1h30A 422 0.3090 b.29.1.4,b.29.1.4 76604,76605 3gneA 252 0.3351 2v73A 191 0.3960 3bodA 178 0.4453 2h0bA 184 0.5793 1qu0A 191 0.7396 b.29.1.4 24225 2jd4A 383 0.9422 1gv9A 260 1.132 b.29.1.13 70596 1sacA 204 1.401 b.29.1.5 24237 2wjsA 608 1.432 2uurA 245 1.725 2r16A 182 1.918 2durA 253 2.245 1pz7A 204 2.503 b.29.1.4 95405 2a6vA 226 2.960 b.29.1.13 126312 1d2sA 170 3.124 b.29.1.4 24221 2vu9A 444 3.376 2cwsA 237 3.623 1a8dA 452 4.179 b.29.1.6,b.42.4.2 24262,25607 1uaiA 224 4.489 b.29.1.18 107761 1yrzA 528 4.591 b.29.1.23,b.67.2.1 123948,123949 3flpA 217 4.983 2vxrA 482 5.626 2a6zA 222 6.768 b.29.1.13 126319 2sliA 679 7.696 b.29.1.9,b.68.1.1 24274,27611 2erfA 209 10.32 b.29.1.4 132287 1oacA 727 10.40 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 2w08A 204 12.21 2w68A 195 16.52 2eceA 462 19.75 3hmyA 450 20.84 1j83A 180 23.45 b.18.1.12 66430 3kf5A 512 23.81 2rcaA 292 24.06 1i4uA 181 29.12 b.60.1.1 61732 1gqeA 365 30.96 e.38.1.1 70351 1o91A 178 36.17 b.22.1.1 92656 1wcuA 153 42.65 1y2tA 142 46.25 b.97.1.2 116407 1ms9A 648 48.60 b.29.1.15,b.68.1.1 85088,85089 3f95A 193 49.20 1a8d 452 50.95 1n1tA 641 51.36 b.29.1.15,b.68.1.1 79821,79822 1od3A 168 51.42 b.18.1.10 86825 1jhnA 424 54.53 b.104.1.1,b.29.1.12 66722,70060 2zexA 147 54.75 3k90A 193 55.31 3m6sA 331 55.37 1dyoA 160 56.70 b.18.1.7 23771 2wnwA 447 58.07 1gwmA 153 58.28 b.18.1.19 83348 1yifA 533 60.97 b.29.1.23,b.67.2.1 123283,123284 1c3hA 137 61.34 b.22.1.1 90405 2htaA 309 68.66 3jrqB 186 68.92 1gr3A 160 71.04 b.22.1.1 65476 1em2A 229 71.59 d.129.3.2 41321 3hrpA 409 72.57 3emwA 217 73.40 3idaA 587 78.83 3ecqA 1531 79.73 1txkA 498 81.46 b.1.18.2,b.30.5.9 107425,107426 2rc8A 294 83.11 1fftB 315 83.26 b.6.1.2,f.17.2.1 23025,43628 1tu5A 746 84.06 1rvxA 327 85.87 b.19.1.2 97937 3kdjA 202 86.75 1ru7A 327 86.86 b.19.1.2 97837 3jrsA 208 88.03