# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 3.63e-06 3hbkA 245 4.68e-06 3immA 201 9.03e-05 3juuA 280 0.003284 2hykA 245 0.004466 2ayhA 214 0.005964 b.29.1.2 24172 1dypA 271 0.006270 b.29.1.2 24185 2ayh 214 0.009210 1gbgA 214 0.009573 b.29.1.2 24171 2vy0A 264 0.01079 1gbg 214 0.01153 3dgtA 280 0.01689 3ilfA 268 0.01739 1upsA 420 0.03438 b.29.1.2,b.42.2.3 113394,113395 2uwaA 274 0.04099 1o4yA 288 0.05293 b.29.1.2 92473 1mveA 243 0.07524 b.29.1.2 85140 3hr9A 241 0.07862 1cpnA 208 0.1748 b.29.1.2 24175 1umzA 278 0.1749 b.29.1.2 99639 1oq1A 223 0.2610 b.29.1.17 93408 2cl2A 298 0.5923 2zzjA 238 1.269 2w39A 298 1.277 3gneA 252 1.618 2a6zA 222 2.753 b.29.1.13 126319 2w68A 195 3.718 1uaiA 224 4.011 b.29.1.18 107761 2a6vA 226 4.142 b.29.1.13 126312 2cwsA 237 5.359 1ux6A 350 6.194 b.29.1.16,g.75.1.1 100145,100146 1ajkA 214 6.265 b.29.1.2 24176 2v3iA 434 8.016 b.29.1.10 152458 1qu0A 191 8.552 b.29.1.4 24225 1y4wA 518 9.074 b.29.1.19,b.67.2.3 116470,116471 2yv8A 164 10.22 1gv9A 260 10.52 b.29.1.13 70596 2uurA 245 10.65 2durA 253 12.02 2h0bA 184 12.24 1pz7A 204 12.69 b.29.1.4 95405 1q2bA 434 13.52 b.29.1.10 95624 2ealA 148 16.36 1bkzA 135 17.45 b.29.1.3 24202 3hhsB 684 17.52 2a5zA 262 17.74 b.29.1.24 126184 1dykA 394 18.11 b.29.1.4,b.29.1.4 24223,24224 1vavA 222 20.56 b.29.1.18 108472 1d2sA 170 22.20 b.29.1.4 24221 1wcuA 153 22.31 3flpA 217 22.99 2r16A 182 23.29 2v24A 208 23.31 1lla 628 23.59 2zhnA 148 23.65 2rfwA 430 23.72 1epwA 1290 24.59 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2erfA 209 25.66 b.29.1.4 132287 1llaA 628 26.79 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 3b3qE 197 26.87 b.29.1.4 154813 1c4rA 182 27.38 b.29.1.4 24229 1j83A 180 28.03 b.18.1.12 66430 2vxrA 482 29.92 3b9cA 144 31.25 1kjlA 146 31.25 b.29.1.3 118689 2yyoA 171 33.05 1ajoA 214 33.25 b.29.1.2 24179 3bodA 178 37.07 1zxq 192 37.20 1yrzA 528 37.87 b.29.1.23,b.67.2.1 123948,123949 2nn8A 138 40.11 b.29.1.3 138392 1hdkA 141 42.81 b.29.1.3 65807 2jd4A 383 43.38 1is3A 135 49.05 b.29.1.3 76773 3eb7A 589 49.42 1c1lA 136 49.95 b.29.1.3 24219 3kf5A 512 53.50 2d6mA 159 53.55 1z6fA 363 53.67 b.105.1.1,e.3.1.1 124520,124521 1ojjA 402 54.42 b.29.1.10 93130 2phdA 368 57.84 b.82.1.23 149468 1y7bA 542 58.66 b.29.1.23,b.67.2.1 122687,122688 3becA 363 58.72 b.105.1.1,e.3.1.1 155181,155182 3i2dA 371 61.01 1gpiA 431 61.51 b.29.1.10 65450 2v73A 191 61.87 2jk9A 212 63.25 2ahoA 414 64.01 b.43.3.1,b.44.1.1,c.37.1.8 126767,126768,126769 1sltA 134 64.37 b.29.1.3 24186 1f60A 458 64.61 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 2c78A 405 64.83 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 3gwjA 674 65.06 1dlcA 584 67.97 b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 1v0aA 178 68.77 b.18.1.30 119815 1a78A 134 69.58 b.29.1.3 24212 1dhkB 223 73.37 b.29.1.1 24157 3itaA 352 76.95 1sacA 204 77.37 b.29.1.5 24237 3duiA 135 77.64 1n1tA 641 77.69 b.29.1.15,b.68.1.1 79821,79822 3lneA 213 78.46 1w6nA 134 79.14 b.29.1.3 114275 2w08A 204 81.69 1pvxA 194 82.50 b.29.1.11 24341 2fnjA 226 85.31 b.29.1.22 133818 1zxqA 192 85.88 b.1.1.3,b.1.1.4 21657,21693 1ynaA 194 86.27 b.29.1.11 24335 2ac1A 541 87.28