# List of top-scoring protein chains for T0518.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 8.19e-24 3hbkA 245 2.41e-23 3immA 201 6.58e-16 2hykA 245 1.37e-15 2vy0A 264 1.83e-14 1gbgA 214 2.48e-11 b.29.1.2 24171 1u0aA 214 9.35e-11 2ayhA 214 1.57e-10 b.29.1.2 24172 1macA 212 4.85e-10 b.29.1.2 24183 3d6eA 201 1.17e-09 3dgtA 280 3.07e-09 1cpnA 208 3.75e-08 b.29.1.2 24175 1cpmA 214 3.83e-08 b.29.1.2 24178 1axkA 394 7.14e-08 b.29.1.2,b.29.1.11 24181,24315 1ajkA 214 3.88e-06 b.29.1.2 24176 1dypA 271 2.41e-05 b.29.1.2 24185 1upsA 420 0.000621 b.29.1.2,b.42.2.3 113394,113395 3juuA 280 0.000630 2r49A 241 0.001633 1mveA 243 0.002338 b.29.1.2 85140 1zm1A 241 0.002845 b.29.1.2 125278 3hr9A 241 0.002979 1ajoA 214 0.003793 b.29.1.2 24179 2vh9A 290 0.009918 3ilfA 268 0.02112 1o4zA 346 0.02598 b.29.1.2 92474 1o4yA 288 0.05774 b.29.1.2 92473 2uwcA 271 0.06368 2w39A 298 0.08939 2uwaA 274 0.1195 1urxA 282 0.1325 b.29.1.2 99837 2uwbA 267 0.2418 2wlqA 298 0.2947 1lhwA 189 0.5419 b.29.1.4 77966 1kdkA 177 0.5515 b.29.1.4 72351 1f5fA 205 0.5798 b.29.1.4 24222 1umzA 278 0.8429 b.29.1.2 99639 1d2sA 170 1.139 b.29.1.4 24221 1okqA 394 1.998 b.29.1.4,b.29.1.4 93267,93268 1dykA 394 2.171 b.29.1.4,b.29.1.4 24223,24224 2a6zA 222 2.580 b.29.1.13 126319 1qu0A 191 2.633 b.29.1.4 24225 2i0kA 561 2.829 d.58.32.3,d.145.1.1 147480,147481 1i19A 561 2.882 d.58.32.3,d.145.1.1 61522,61523 2a6yA 256 3.157 b.29.1.13 126318 2nw2B 243 3.173 2r16A 182 4.337 1z0hA 438 5.322 b.29.1.6,b.42.4.2 124314,124315 2nm1A 436 5.348 b.29.1.6,b.42.4.2 138369,138370 1r1zA 263 6.635 b.29.1.13 96840 1gv9A 260 6.640 b.29.1.13 70596 3lcpA 247 9.436 3a4uA 255 9.709 1oq1A 223 12.71 b.29.1.17 93408 1q8mA 127 15.79 b.1.1.1 96215 1z78A 215 16.85 b.29.1.4 124590 2erfA 209 17.85 b.29.1.4 132287 1smoA 119 19.36 b.1.1.1 105764 2oujA 251 21.07 b.29.1.4 149024 2jd4A 383 24.97 1hdkA 141 29.71 b.29.1.3 65807 1lclA 142 29.75 b.29.1.3 24216 2dfuA 264 31.99 2cwlA 302 38.59 a.25.1.3 130927 1ny6A 267 43.03 c.37.1.20 92321 2o14A 375 43.64 b.18.1.32,c.23.10.8 148544,148545 2v8tA 302 46.41 1uaiA 224 49.89 b.29.1.18 107761 1fgjA 546 53.25 a.138.1.3 19679 1h3iA 293 54.29 b.76.2.1,b.85.7.1 76635,76636 2dckA 354 56.80 1ycsB 239 57.38 d.211.1.1,b.34.2.1 19155,24553 2v5wA 388 66.31 2jbhA 225 70.45 1m6iA 493 71.76 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1x50A 164 73.30 2ialB 240 73.71 1ny5A 387 75.52 c.23.1.1,c.37.1.20 92317,92318 3bquC 233 75.85 1t64A 377 78.99 c.42.1.2 106543 3eztA 388 86.74 2d93A 134 87.98 3ew8A 388 88.04 3f0rA 388 88.15 1gv4A 528 89.01 c.3.1.5,c.3.1.5,d.87.1.1 70589,70590,70591