# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 8.37e-23 3hbkA 245 6.10e-21 3immA 201 6.54e-17 2hykA 245 1.31e-11 1dypA 271 1.64e-11 b.29.1.2 24185 3juuA 280 8.42e-11 1gbgA 214 8.99e-11 b.29.1.2 24171 2ayhA 214 1.02e-10 b.29.1.2 24172 2vy0A 264 1.81e-10 2ayh 214 4.67e-10 1upsA 420 4.86e-10 b.29.1.2,b.42.2.3 113394,113395 2uwaA 274 5.33e-10 2w39A 298 1.02e-09 1gbg 214 1.71e-09 3dgtA 280 2.43e-09 2cl2A 298 3.53e-09 1o4yA 288 4.68e-09 b.29.1.2 92473 1cpnA 208 1.01e-08 b.29.1.2 24175 1umzA 278 1.02e-08 b.29.1.2 99639 3ilfA 268 1.28e-08 3hr9A 241 7.56e-07 1mveA 243 1.11e-06 b.29.1.2 85140 1ajkA 214 4.51e-05 b.29.1.2 24176 1ajoA 214 0.000119 b.29.1.2 24179 1oq1A 223 0.01687 b.29.1.17 93408 2zzjA 238 0.02900 2durA 253 0.03998 3b3qE 197 0.04774 b.29.1.4 154813 1c4rA 182 0.05624 b.29.1.4 24229 3bodA 178 0.06410 2r16A 182 0.07360 3hmyA 450 0.07495 1a8dA 452 0.08306 b.29.1.6,b.42.4.2 24262,25607 2vu9A 444 0.08583 2a6vA 226 0.08619 b.29.1.13 126312 1qu0A 191 0.1239 b.29.1.4 24225 2a6zA 222 0.1294 b.29.1.13 126319 1pz7A 204 0.1370 b.29.1.4 95405 1sacA 204 0.1733 b.29.1.5 24237 2wjsA 608 0.1805 2vxrA 482 0.2160 3flpA 217 0.3764 2h0bA 184 0.4671 2uurA 245 0.5213 1a8d 452 0.8847 1d2sA 170 0.9791 b.29.1.4 24221 2v73A 191 1.013 1shsA 147 1.017 b.15.1.1 23675 1f5fA 205 1.176 b.29.1.4 24222 2erfA 209 1.292 b.29.1.4 132287 1uaiA 224 1.590 b.29.1.18 107761 2w08A 204 1.686 1uypA 432 1.700 b.29.1.19,b.67.2.3 100176,100177 1gv9A 260 1.761 b.29.1.13 70596 1y2tA 142 3.138 b.97.1.2 116407 3emwA 217 3.171 3gneA 252 3.248 1yifA 533 3.252 b.29.1.23,b.67.2.1 123283,123284 1h30A 422 4.028 b.29.1.4,b.29.1.4 76604,76605 2ofcA 142 4.062 1gmeA 151 4.107 b.15.1.1 65305 1n1tA 641 4.307 b.29.1.15,b.68.1.1 79821,79822 2cwsA 237 4.609 2jk9A 212 4.733 1xsjA 778 6.459 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 2uxtA 451 7.618 2jd4A 383 7.854 1x89A 178 8.338 b.60.1.1 121799 1lnsA 763 10.15 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 3dszA 186 10.88 1ms9A 648 10.96 b.29.1.15,b.68.1.1 85088,85089 3b9cA 144 11.51 1c1lA 136 12.47 b.29.1.3 24219 1ln1A 214 13.19 d.129.3.2 74038 2oqeA 660 13.22 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 2d6mA 159 13.32 1guiA 155 13.32 b.18.1.14 76351 3cmpA 198 13.42 2an1A 292 13.69 2nn8A 138 13.84 b.29.1.3 138392 2zhnA 148 13.98 1yq2A 1024 14.46 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 2imjA 166 14.84 d.17.4.23 147725 1gwmA 153 15.05 b.18.1.19 83348 3hikA 237 16.27 1w2tA 432 18.51 b.29.1.19,b.67.2.3 120607,120608 2wnxA 170 20.08 1x99A 145 20.86 b.97.1.2 114978 1uxxX 133 20.91 b.18.1.10 100169 1a78A 134 20.94 b.29.1.3 24212 2v24A 208 21.57 1uwwA 191 21.79 b.18.1.23 108079 1j1lA 290 21.94 b.82.1.12 90766 1wcuA 153 22.22 2wkkA 150 22.27 3jrqB 186 22.68 1mzyA 333 23.13 b.6.1.3,b.6.1.3 103848,103849 2ealA 148 25.14 2fnjA 226 25.40 b.29.1.22 133818 2d1wA 638 25.42 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 1orvA 728 25.68 b.70.3.1,c.69.1.24 87354,87355 1w6nA 134 27.24 b.29.1.3 114275 3kf3A 509 28.80 1w6gA 646 29.84 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 1w7cA 747 30.96 b.30.2.1,d.17.2.1,d.17.2.1 145814,145815,145816 1i4uA 181 33.02 b.60.1.1 61732 2wewA 172 33.58 1is3A 135 34.89 b.29.1.3 76773 1lcl 142 36.72 1jhnA 424 38.23 b.104.1.1,b.29.1.12 66722,70060 2w68A 195 38.87 1kjlA 146 39.12 b.29.1.3 118689 2sliA 679 39.36 b.29.1.9,b.68.1.1 24274,27611 1n9eA 787 43.82 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 3gdcA 288 44.34 1kbvA 327 44.67 b.6.1.3,b.6.1.3 68395,68396 2ac1A 541 45.06 2bolA 314 46.85 1w9sA 142 50.36 b.18.1.10 114416 2camA 127 51.23 b.61.1.1 27407 2htaA 309 52.09 2ig6A 150 52.97 3dtqA 186 53.13 1ravA 127 53.14 b.61.1.1 27409 1fsoA 139 57.45 b.1.18.8 60007 3loyA 633 60.10 1kmtA 141 61.36 b.1.18.8 77442 1bec 238 63.80 3g0bA 740 64.60 1qwdA 177 65.44 b.60.1.1 96471 3ikwA 374 69.24 1fgyA 127 70.40 b.55.1.1 26976 3hx6A 570 71.52 3hlkA 446 73.31 3f95A 193 73.97 1h09A 338 74.32 b.109.1.1,c.1.8.8 83420,83421 2r0hA 164 75.48 1rjoA 646 77.78 b.30.2.1,d.17.2.1,d.17.2.1 111832,111833,111834 2pil 159 78.20 1hdkA 141 78.79 b.29.1.3 65807 1lyqA 104 79.00 b.1.18.17 78302 3k90A 193 79.37 2dfuA 264 79.87 1gzwA 134 80.53 b.29.1.3 90535 3bx8A 178 81.07 1g43A 160 82.13 b.2.2.2 22392 1avgI 142 83.63 b.60.1.3 27229 1v04A 355 84.47 b.68.6.2 100240 3jrsA 208 84.88 3fvhA 237 85.42 1dykA 394 86.02 b.29.1.4,b.29.1.4 24223,24224 1dueA 242 86.90 b.47.1.1 76140 2gc7A 386 87.18 b.69.2.1 134954 3k3kA 211 89.42 1umwA 237 89.83 d.223.1.2,d.223.1.2 99631,99632