# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 2.44e-24 3hbkA 245 3.01e-22 3immA 201 1.31e-17 2hykA 245 9.75e-13 1dypA 271 3.35e-12 b.29.1.2 24185 2ayhA 214 7.43e-12 b.29.1.2 24172 1gbgA 214 9.74e-12 b.29.1.2 24171 3juuA 280 1.24e-11 2vy0A 264 2.34e-11 2ayh 214 5.05e-11 1upsA 420 7.26e-11 b.29.1.2,b.42.2.3 113394,113395 2uwaA 274 1.36e-10 1gbg 214 3.49e-10 2w39A 298 3.57e-10 2cl2A 298 7.77e-10 3dgtA 280 9.04e-10 1o4yA 288 1.57e-09 b.29.1.2 92473 1cpnA 208 1.62e-09 b.29.1.2 24175 3ilfA 268 3.40e-09 1umzA 278 4.15e-09 b.29.1.2 99639 3hr9A 241 2.03e-07 1mveA 243 2.65e-07 b.29.1.2 85140 1ajkA 214 1.17e-05 b.29.1.2 24176 1ajoA 214 3.36e-05 b.29.1.2 24179 1oq1A 223 0.008444 b.29.1.17 93408 2vu9A 444 0.01855 2durA 253 0.02152 1c4rA 182 0.02232 b.29.1.4 24229 3b3qE 197 0.02515 b.29.1.4 154813 2zzjA 238 0.02888 3hmyA 450 0.03136 3bodA 178 0.04400 1a8dA 452 0.04658 b.29.1.6,b.42.4.2 24262,25607 2r16A 182 0.05123 2vxrA 482 0.05667 1qu0A 191 0.07634 b.29.1.4 24225 2a6zA 222 0.08375 b.29.1.13 126319 2a6vA 226 0.1037 b.29.1.13 126312 1pz7A 204 0.1138 b.29.1.4 95405 1sacA 204 0.2187 b.29.1.5 24237 2wjsA 608 0.3374 1a8d 452 0.3431 2v73A 191 0.3757 2h0bA 184 0.4309 1shsA 147 0.4901 b.15.1.1 23675 1uypA 432 0.6597 b.29.1.19,b.67.2.3 100176,100177 1d2sA 170 0.7107 b.29.1.4 24221 3flpA 217 0.7273 2uurA 245 0.7815 2erfA 209 0.8725 b.29.1.4 132287 1uaiA 224 0.9340 b.29.1.18 107761 3gneA 252 1.241 2w08A 204 1.257 1f5fA 205 1.327 b.29.1.4 24222 1gv9A 260 1.423 b.29.1.13 70596 1n1tA 641 1.591 b.29.1.15,b.68.1.1 79821,79822 1y2tA 142 1.914 b.97.1.2 116407 1gmeA 151 1.959 b.15.1.1 65305 2cwsA 237 2.070 1yifA 533 2.591 b.29.1.23,b.67.2.1 123283,123284 2ofcA 142 3.033 3emwA 217 3.101 2jk9A 212 3.189 1h30A 422 3.261 b.29.1.4,b.29.1.4 76604,76605 1xsjA 778 3.990 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 1ms9A 648 4.215 b.29.1.15,b.68.1.1 85088,85089 1wcuA 153 5.076 2jd4A 383 5.820 1mzyA 333 6.256 b.6.1.3,b.6.1.3 103848,103849 2wnxA 170 6.583 2ac1A 541 8.230 1guiA 155 8.834 b.18.1.14 76351 1x99A 145 10.61 b.97.1.2 114978 2uxtA 451 10.75 1gwmA 153 11.53 b.18.1.19 83348 1yq2A 1024 11.58 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 3kf3A 509 11.72 2w68A 195 11.73 1y4wA 518 11.86 b.29.1.19,b.67.2.3 116470,116471 1lnsA 763 11.99 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 2v24A 208 12.78 2imjA 166 13.92 d.17.4.23 147725 1x89A 178 14.81 b.60.1.1 121799 2nn8A 138 14.83 b.29.1.3 138392 2fnjA 226 14.95 b.29.1.22 133818 1uwwA 191 16.06 b.18.1.23 108079 1ln1A 214 16.13 d.129.3.2 74038 3hikA 237 16.28 2oqeA 660 16.88 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 2d1wA 638 19.08 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 1w2tA 432 19.09 b.29.1.19,b.67.2.3 120607,120608 3b9cA 144 19.34 2d6mA 159 21.39 1orvA 728 22.21 b.70.3.1,c.69.1.24 87354,87355 1v04A 355 22.56 b.68.6.2 100240 2zhnA 148 22.75 1c1lA 136 23.67 b.29.1.3 24219 1j1lA 290 25.92 b.82.1.12 90766 3cmpA 198 26.67 3dszA 186 26.74 1is3A 135 26.97 b.29.1.3 76773 1g43A 160 27.34 b.2.2.2 22392 1lcl 142 27.80 2sliA 679 28.04 b.29.1.9,b.68.1.1 24274,27611 1a78A 134 28.91 b.29.1.3 24212 1w6gA 646 29.21 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 3ecqA 1531 31.15 3gdcA 288 32.83 1aozA 552 33.34 b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 2wewA 172 35.27 2w1nA 238 36.00 1w6nA 134 36.55 b.29.1.3 114275 3dtqA 186 37.12 3kf5A 512 41.30 1vavA 222 43.40 b.29.1.18 108472 2wkkA 150 43.82 1mdaH 368 43.99 b.69.2.1 27637 3hx6A 570 44.38 1i4uA 181 44.90 b.60.1.1 61732 2an1A 292 45.72 3ejaA 208 46.50 3c2uA 538 46.59 1lyqA 104 46.80 b.1.18.17 78302 1fgyA 127 47.16 b.55.1.1 26976 3jrqB 186 47.99 3fvhA 237 48.22 1xx0A 127 50.55 b.55.1.1 122412 2d73A 738 52.97 1h09A 338 53.22 b.109.1.1,c.1.8.8 83420,83421 2ealA 148 53.28 1hdkA 141 53.88 b.29.1.3 65807 1o91A 178 54.10 b.22.1.1 92656 1hp1A 516 54.51 d.114.1.1,d.159.1.2 70976,70977 1kjlA 146 55.02 b.29.1.3 118689 1kbvA 327 55.28 b.6.1.3,b.6.1.3 68395,68396 2zl8A 638 56.61 b.30.2.1,d.17.2.1,d.17.2.1 154620,154621,154622 3achA 203 58.25 1j83A 180 58.88 b.18.1.12 66430 1bec 238 59.30 1bhgA 613 59.79 b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 2vpuA 354 61.64 2ig6A 150 61.88 2vtcA 249 62.64 3hihA 223 63.48 1w7cA 747 64.44 b.30.2.1,d.17.2.1,d.17.2.1 145814,145815,145816 1umwA 237 67.43 d.223.1.2,d.223.1.2 99631,99632 3ikwA 374 67.45 1x8qA 184 67.80 b.60.1.1 114966 1qwdA 177 68.16 b.60.1.1 96471 2b9lA 394 68.73 3id1A 95 69.07 1iqyA 638 69.17 b.30.2.1,d.17.2.1,d.17.2.1 76763,76764,76765 1rjoA 646 70.59 b.30.2.1,d.17.2.1,d.17.2.1 111832,111833,111834 1tf4A 605 70.77 a.102.1.2,b.2.2.2 18827,22393 2e8iA 392 73.05 1fsoA 139 73.17 b.1.18.8 60007 2yv8A 164 73.18 1ravA 127 73.32 b.61.1.1 27409 3f95A 193 73.60 2dv6A 447 74.01 1dykA 394 75.89 b.29.1.4,b.29.1.4 24223,24224 2pil 159 76.90 1gzwA 134 77.63 b.29.1.3 90535 3loyA 633 78.03 2camA 127 78.64 b.61.1.1 27407 3gfcA 425 79.72 1uxxX 133 81.28 b.18.1.10 100169 1d8cA 723 83.96 c.1.13.1 29325 1ui8A 638 84.33 b.30.2.1,d.17.2.1,d.17.2.1 99419,99420,99421 1zdsA 336 85.36 b.6.1.3,b.6.1.3 124952,124953 2jkbA 686 85.50 1c3hA 137 87.73 b.22.1.1 90405 2hu5A 582 89.01 b.69.7.2,c.69.1.33 136763,136764