# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 3.80e-24 3hbkA 245 2.69e-22 3immA 201 1.99e-17 2hykA 245 2.50e-12 1dypA 271 1.09e-11 b.29.1.2 24185 2ayhA 214 1.54e-11 b.29.1.2 24172 2vy0A 264 1.63e-11 1gbgA 214 2.72e-11 b.29.1.2 24171 3juuA 280 4.52e-11 2ayh 214 1.25e-10 2uwaA 274 1.36e-10 1upsA 420 1.88e-10 b.29.1.2,b.42.2.3 113394,113395 1gbg 214 5.90e-10 3dgtA 280 1.92e-09 2w39A 298 2.79e-09 1cpnA 208 3.17e-09 b.29.1.2 24175 2cl2A 298 3.34e-09 1o4yA 288 3.84e-09 b.29.1.2 92473 3ilfA 268 7.00e-09 1umzA 278 9.08e-09 b.29.1.2 99639 1mveA 243 2.01e-07 b.29.1.2 85140 3hr9A 241 2.59e-07 1ajkA 214 1.18e-05 b.29.1.2 24176 1ajoA 214 5.53e-05 b.29.1.2 24179 2wjsA 608 0.007314 1oq1A 223 0.02031 b.29.1.17 93408 3hmyA 450 0.03245 2r16A 182 0.04087 3b3qE 197 0.04303 b.29.1.4 154813 2vxrA 482 0.04440 2vu9A 444 0.04568 3bodA 178 0.04662 2zzjA 238 0.05550 1c4rA 182 0.05758 b.29.1.4 24229 1qu0A 191 0.06413 b.29.1.4 24225 1a8dA 452 0.06789 b.29.1.6,b.42.4.2 24262,25607 1pz7A 204 0.09091 b.29.1.4 95405 2durA 253 0.09713 1uaiA 224 0.1263 b.29.1.18 107761 2h0bA 184 0.1315 1sacA 204 0.2190 b.29.1.5 24237 2a6vA 226 0.2622 b.29.1.13 126312 3flpA 217 0.2638 2erfA 209 0.4063 b.29.1.4 132287 1shsA 147 0.4205 b.15.1.1 23675 1gmeA 151 0.4290 b.15.1.1 65305 2w08A 204 0.4376 1f5fA 205 0.4554 b.29.1.4 24222 2a6zA 222 0.4747 b.29.1.13 126319 2cwsA 237 0.5606 1d2sA 170 0.5714 b.29.1.4 24221 2v73A 191 0.5798 2uurA 245 0.6409 1h30A 422 1.122 b.29.1.4,b.29.1.4 76604,76605 1ms9A 648 1.342 b.29.1.15,b.68.1.1 85088,85089 1n1tA 641 1.771 b.29.1.15,b.68.1.1 79821,79822 1xsjA 778 1.931 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 1y2tA 142 2.114 b.97.1.2 116407 1a8d 452 2.203 1dykA 394 2.860 b.29.1.4,b.29.1.4 24223,24224 2jd4A 383 3.075 2ofcA 142 3.362 1yifA 533 3.376 b.29.1.23,b.67.2.1 123283,123284 1lnsA 763 3.908 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1wcuA 153 3.966 1uypA 432 4.198 b.29.1.19,b.67.2.3 100176,100177 3gneA 252 4.437 1gwmA 153 4.448 b.18.1.19 83348 1mzyA 333 4.838 b.6.1.3,b.6.1.3 103848,103849 2nn8A 138 4.982 b.29.1.3 138392 3b9cA 144 6.901 2w68A 195 7.158 1c1lA 136 9.456 b.29.1.3 24219 1gv9A 260 10.17 b.29.1.13 70596 2imjA 166 10.17 d.17.4.23 147725 1x99A 145 10.31 b.97.1.2 114978 1yq2A 1024 11.07 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 2d6mA 159 11.71 1lcl 142 13.10 2wnxA 170 13.15 1x89A 178 13.79 b.60.1.1 121799 1uxxX 133 13.86 b.18.1.10 100169 1is3A 135 14.52 b.29.1.3 76773 3dszA 186 16.14 3emwA 217 16.32 3gdcA 288 16.71 1guiA 155 17.31 b.18.1.14 76351 1orvA 728 17.33 b.70.3.1,c.69.1.24 87354,87355 3dtqA 186 18.27 3kf3A 509 19.37 1j1lA 290 19.98 b.82.1.12 90766 1a78A 134 20.19 b.29.1.3 24212 1x8qA 184 21.80 b.60.1.1 114966 2ac1A 541 21.81 2vw2A 697 22.41 1w6nA 134 22.43 b.29.1.3 114275 2zhnA 148 22.62 1hdkA 141 22.84 b.29.1.3 65807 2bolA 314 23.31 3ikwA 374 24.15 2jk9A 212 24.24 1ofzA 312 24.25 b.68.8.1 86978 1vavA 222 25.11 b.29.1.18 108472 1aozA 552 25.36 b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 1jhnA 424 26.18 b.104.1.1,b.29.1.12 66722,70060 1kjlA 146 27.66 b.29.1.3 118689 2ealA 148 28.56 1avgI 142 29.31 b.60.1.3 27229 1bkzA 135 29.88 b.29.1.3 24202 1h09A 338 29.95 b.109.1.1,c.1.8.8 83420,83421 2oqeA 660 30.08 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1i4uA 181 30.15 b.60.1.1 61732 1v7wA 807 30.63 a.102.1.4,b.30.5.3 108411,108412 2cn3A 737 31.31 2uxtA 451 31.66 2r0hA 164 31.82 2q2gA 180 33.46 2an1A 292 33.46 1kbvA 327 34.23 b.6.1.3,b.6.1.3 68395,68396 3cmpA 198 34.39 2sliA 679 34.96 b.29.1.9,b.68.1.1 24274,27611 3iesA 551 36.88 1v04A 355 37.21 b.68.6.2 100240 2wkkA 150 37.56 2psbA 320 38.01 c.153.1.1 149819 1bec 238 38.06 1tf4A 605 38.62 a.102.1.2,b.2.2.2 18827,22393 2pil 159 38.74 3g0bA 740 40.07 2yv8A 164 40.38 3hrpA 409 41.16 2vzsA 1032 41.51 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153727,153728,153729,153730,153731 2v5sA 394 43.22 1fgyA 127 44.64 b.55.1.1 26976 2dv6A 447 45.66 3c2uA 538 46.26 2fnjA 226 46.64 b.29.1.22 133818 2k4tA 291 46.84 1w7cA 747 47.56 b.30.2.1,d.17.2.1,d.17.2.1 145814,145815,145816 1gzwA 134 47.75 b.29.1.3 90535 2d73A 738 48.09 2v3fA 505 51.80 b.71.1.2,c.1.8.3 152453,152454 2d1wA 638 53.01 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 2dfuA 264 54.66 2q9oA 559 55.05 b.6.1.3,b.6.1.3,b.6.1.3 150149,150150,150151 1ln1A 214 55.06 d.129.3.2 74038 1uwwA 191 57.43 b.18.1.23 108079 1w2tA 432 57.56 b.29.1.19,b.67.2.3 120607,120608 1hp1A 516 57.86 d.114.1.1,d.159.1.2 70976,70977 1qqsA 174 58.65 b.60.1.1 27143 2camA 127 59.12 b.61.1.1 27407 3gleA 295 60.40 1s1dA 331 61.92 b.67.3.1 98344 1gu3A 149 63.74 b.18.1.14 76350 3glaA 100 63.98 2k7qA 191 64.11 1tl2A 236 64.89 b.67.1.1 27541 1pm1X 180 66.41 b.60.1.1 104189 2jkbA 686 69.16 1ravA 127 69.51 b.61.1.1 27409 3gyrA 612 69.95 1w9sA 142 70.14 b.18.1.10 114416 2v05A 311 72.02 1qwdA 177 72.68 b.60.1.1 96471 2oy7A 320 73.92 3cg8A 343 75.82 2hu5A 582 75.88 b.69.7.2,c.69.1.33 136763,136764 2p17A 277 76.31 2zooA 442 80.12 1w6gA 646 80.82 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 1kv9A 668 81.35 a.3.1.6,b.70.1.1 73056,73057 2o62A 270 81.58 b.60.1.9,b.60.1.9 148622,148623 1g0dA 695 81.89 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 3hacA 728 82.14 3duiA 135 82.17 1rwrA 301 82.47 b.80.1.11 97990 3ckaA 320 83.00 1xe7A 203 85.89 b.82.1.16 115213 3kf5A 512 85.90 1zdsA 336 87.09 b.6.1.3,b.6.1.3 124952,124953 1rwiA 270 88.06 b.68.9.1 97987 2g8cO 251 89.45 1h8gA 95 89.77 b.109.1.1 65735