# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 1.77e-24 3hbkA 245 3.63e-22 3immA 201 1.20e-17 2hykA 245 1.66e-12 1dypA 271 5.65e-12 b.29.1.2 24185 2ayhA 214 1.04e-11 b.29.1.2 24172 1gbgA 214 1.73e-11 b.29.1.2 24171 2vy0A 264 1.79e-11 3juuA 280 4.22e-11 2ayh 214 6.99e-11 1upsA 420 1.04e-10 b.29.1.2,b.42.2.3 113394,113395 2uwaA 274 1.88e-10 1gbg 214 3.26e-10 2w39A 298 4.02e-10 2cl2A 298 1.51e-09 3dgtA 280 1.55e-09 1o4yA 288 1.57e-09 b.29.1.2 92473 1cpnA 208 1.59e-09 b.29.1.2 24175 1umzA 278 4.37e-09 b.29.1.2 99639 3ilfA 268 1.19e-08 3hr9A 241 3.24e-07 1mveA 243 3.84e-07 b.29.1.2 85140 1ajkA 214 1.38e-05 b.29.1.2 24176 1ajoA 214 5.67e-05 b.29.1.2 24179 1oq1A 223 0.03842 b.29.1.17 93408 2zzjA 238 0.03916 3b3qE 197 0.04210 b.29.1.4 154813 3hmyA 450 0.04340 2durA 253 0.05404 3bodA 178 0.05651 2vu9A 444 0.05998 1c4rA 182 0.06503 b.29.1.4 24229 2r16A 182 0.07894 1pz7A 204 0.1030 b.29.1.4 95405 1a8dA 452 0.1036 b.29.1.6,b.42.4.2 24262,25607 2vxrA 482 0.1045 1qu0A 191 0.1171 b.29.1.4 24225 2a6vA 226 0.2528 b.29.1.13 126312 2wjsA 608 0.2658 2a6zA 222 0.3391 b.29.1.13 126319 1sacA 204 0.3659 b.29.1.5 24237 2h0bA 184 0.4291 1shsA 147 0.5480 b.15.1.1 23675 2erfA 209 0.6683 b.29.1.4 132287 1a8d 452 0.7806 3flpA 217 0.8300 1uaiA 224 1.022 b.29.1.18 107761 1f5fA 205 1.349 b.29.1.4 24222 2uurA 245 1.418 2v73A 191 2.013 1gmeA 151 2.077 b.15.1.1 65305 1d2sA 170 2.284 b.29.1.4 24221 2w08A 204 2.717 1y2tA 142 3.271 b.97.1.2 116407 1uypA 432 3.453 b.29.1.19,b.67.2.3 100176,100177 1gv9A 260 4.929 b.29.1.13 70596 1lnsA 763 4.943 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1h30A 422 4.964 b.29.1.4,b.29.1.4 76604,76605 1yq2A 1024 4.995 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 1n1tA 641 5.418 b.29.1.15,b.68.1.1 79821,79822 1yifA 533 5.851 b.29.1.23,b.67.2.1 123283,123284 2cwsA 237 6.040 2ofcA 142 6.208 1mzyA 333 6.865 b.6.1.3,b.6.1.3 103848,103849 1x89A 178 7.301 b.60.1.1 121799 1gwmA 153 7.579 b.18.1.19 83348 1xsjA 778 8.236 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 3gneA 252 8.875 2uxtA 451 8.996 3emwA 217 9.361 2jd4A 383 9.760 1j1lA 290 10.45 b.82.1.12 90766 3dszA 186 11.78 2imjA 166 12.38 d.17.4.23 147725 1ln1A 214 12.68 d.129.3.2 74038 1wcuA 153 13.08 3hikA 237 14.42 1orvA 728 14.81 b.70.3.1,c.69.1.24 87354,87355 3cmpA 198 19.07 3gdcA 288 20.46 2an1A 292 20.58 1uxxX 133 21.03 b.18.1.10 100169 1guiA 155 22.06 b.18.1.14 76351 2wewA 172 22.48 1jhnA 424 22.65 b.104.1.1,b.29.1.12 66722,70060 1x99A 145 23.06 b.97.1.2 114978 1c1lA 136 23.33 b.29.1.3 24219 1i4uA 181 25.50 b.60.1.1 61732 2jk9A 212 26.31 1is3A 135 27.03 b.29.1.3 76773 1ms9A 648 27.85 b.29.1.15,b.68.1.1 85088,85089 2wkkA 150 27.91 2nn8A 138 27.94 b.29.1.3 138392 2wnxA 170 29.75 3hx6A 570 31.90 1dykA 394 34.76 b.29.1.4,b.29.1.4 24223,24224 2d1wA 638 34.88 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 2camA 127 35.15 b.61.1.1 27407 1ravA 127 35.62 b.61.1.1 27409 3b9cA 144 36.84 2jbwA 386 38.65 c.69.1.41 147962 1bhgA 613 38.80 b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 1a78A 134 39.66 b.29.1.3 24212 1fgjA 546 40.03 a.138.1.3 19679 1dueA 242 40.45 b.47.1.1 76140 3jrqB 186 41.42 2r0hA 164 41.47 2htaA 309 41.47 1lcl 142 41.53 3dtqA 186 42.88 1g0dA 695 45.11 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 2w68A 195 46.37 1kbvA 327 47.29 b.6.1.3,b.6.1.3 68395,68396 2bolA 314 47.38 1fgyA 127 48.16 b.55.1.1 26976 1w6nA 134 50.14 b.29.1.3 114275 2v3fA 505 50.51 b.71.1.2,c.1.8.3 152453,152454 1uwwA 191 54.35 b.18.1.23 108079 1w6gA 646 55.65 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 1qwdA 177 55.75 b.60.1.1 96471 1v04A 355 57.03 b.68.6.2 100240 1biaA 321 58.14 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 3ejaA 208 60.49 2e8iA 392 60.60 1w7cA 747 61.79 b.30.2.1,d.17.2.1,d.17.2.1 145814,145815,145816 3ikwA 374 62.21 3gyrA 612 64.36 2zhnA 148 64.39 1ypqA 135 65.79 d.169.1.1 123833 3dorA 583 67.11 2sliA 679 67.73 b.29.1.9,b.68.1.1 24274,27611 3f95A 193 68.33 1w2tA 432 69.18 b.29.1.19,b.67.2.3 120607,120608 1w9sA 142 69.51 b.18.1.10 114416 3kh7A 176 69.65 2d6mA 159 71.31 1tf4A 605 71.67 a.102.1.2,b.2.2.2 18827,22393 2vzsA 1032 72.71 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153727,153728,153729,153730,153731 2dfuA 264 72.82 2vtcA 249 74.70 1q47A 495 76.96 b.69.12.1 104532 2psoA 237 76.98 d.129.3.2 149824 1hdkA 141 77.57 b.29.1.3 65807 2gc7A 386 78.45 b.69.2.1 134954 2ig6A 150 82.77 3kf3A 509 83.37 1o91A 178 86.33 b.22.1.1 92656 1wcqA 601 87.25 b.1.18.2,b.18.1.1,b.68.1.1 120894,120895,120896 2v24A 208 87.51