# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 9.57e-28 3hbkA 245 1.32e-25 3immA 201 4.98e-21 2hykA 245 3.60e-14 1dypA 271 2.57e-13 b.29.1.2 24185 2ayhA 214 3.72e-13 b.29.1.2 24172 2vy0A 264 4.99e-13 1gbgA 214 8.24e-13 b.29.1.2 24171 3juuA 280 2.28e-12 2ayh 214 3.17e-12 2uwaA 274 1.23e-11 1gbg 214 1.50e-11 2w39A 298 4.33e-11 1upsA 420 4.81e-11 b.29.1.2,b.42.2.3 113394,113395 1cpnA 208 5.47e-11 b.29.1.2 24175 3dgtA 280 7.24e-11 1o4yA 288 2.90e-10 b.29.1.2 92473 2cl2A 298 3.05e-10 3ilfA 268 3.57e-10 1umzA 278 4.36e-10 b.29.1.2 99639 1mveA 243 1.08e-08 b.29.1.2 85140 3hr9A 241 1.38e-08 1ajkA 214 7.68e-07 b.29.1.2 24176 1ajoA 214 3.94e-06 b.29.1.2 24179 1oq1A 223 0.004327 b.29.1.17 93408 1c4rA 182 0.006694 b.29.1.4 24229 3b3qE 197 0.007280 b.29.1.4 154813 2r16A 182 0.008613 3bodA 178 0.008872 1qu0A 191 0.01451 b.29.1.4 24225 1pz7A 204 0.01500 b.29.1.4 95405 2zzjA 238 0.01705 2h0bA 184 0.01842 2durA 253 0.01983 2wjsA 608 0.02360 2a6zA 222 0.03538 b.29.1.13 126319 2a6vA 226 0.03654 b.29.1.13 126312 1f5fA 205 0.08386 b.29.1.4 24222 1sacA 204 0.1012 b.29.1.5 24237 1uaiA 224 0.1135 b.29.1.18 107761 3hmyA 450 0.1354 2vxrA 482 0.1384 2vu9A 444 0.1538 1d2sA 170 0.1967 b.29.1.4 24221 2erfA 209 0.2257 b.29.1.4 132287 1a8dA 452 0.4197 b.29.1.6,b.42.4.2 24262,25607 2v73A 191 0.5795 1gv9A 260 0.6242 b.29.1.13 70596 2uurA 245 0.6483 2cwsA 237 0.8206 3flpA 217 0.8685 2w08A 204 1.028 1shsA 147 1.509 b.15.1.1 23675 1a8d 452 1.533 1wcuA 153 1.680 3b9cA 144 1.761 1is3A 135 1.919 b.29.1.3 76773 1w6nA 134 1.979 b.29.1.3 114275 2jd4A 383 2.105 1a78A 134 2.141 b.29.1.3 24212 1gwmA 153 2.329 b.18.1.19 83348 2nn8A 138 2.351 b.29.1.3 138392 1lcl 142 2.868 1c1lA 136 2.998 b.29.1.3 24219 1gzwA 134 3.108 b.29.1.3 90535 1yifA 533 3.181 b.29.1.23,b.67.2.1 123283,123284 2jk9A 212 3.389 1y2tA 142 3.457 b.97.1.2 116407 1h30A 422 3.569 b.29.1.4,b.29.1.4 76604,76605 1yq2A 1024 4.461 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 2wkkA 150 4.824 1hdkA 141 5.428 b.29.1.3 65807 3gneA 252 5.873 2zhnA 148 6.005 2ofcA 142 6.140 2r0hA 164 6.150 2w68A 195 6.584 1dykA 394 7.165 b.29.1.4,b.29.1.4 24223,24224 1guiA 155 8.719 b.18.1.14 76351 3dszA 186 8.793 2yv8A 164 10.68 1kjlA 146 11.04 b.29.1.3 118689 1bkzA 135 11.96 b.29.1.3 24202 1ihgA 370 12.29 a.118.8.1,b.62.1.1 62380,62381 1sltA 134 12.51 b.29.1.3 24186 3emwA 217 14.60 1gmeA 151 14.83 b.15.1.1 65305 2ealA 148 16.25 1lyqA 104 16.96 b.1.18.17 78302 3cmpA 198 17.07 1uypA 432 17.61 b.29.1.19,b.67.2.3 100176,100177 1x89A 178 17.70 b.60.1.1 121799 2zglA 167 22.58 3jrqB 186 22.91 3iesA 551 23.34 1uxxX 133 23.76 b.18.1.10 100169 1avgI 142 25.73 b.60.1.3 27229 2d6mA 159 27.66 2kd2A 94 27.78 1qoiA 177 29.45 b.62.1.1 27490 2v24A 208 31.03 1tf4A 605 31.18 a.102.1.2,b.2.2.2 18827,22393 1x99A 145 34.30 b.97.1.2 114978 1s4nA 348 35.13 c.68.1.16 98501 1c3hA 137 35.41 b.22.1.1 90405 3c2uA 538 35.92 2wnxA 170 36.42 3dtqA 186 36.77 1xsjA 778 36.93 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 1qwdA 177 37.81 b.60.1.1 96471 1w6gA 646 37.94 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 2camA 127 38.66 b.61.1.1 27407 3k0mA 165 38.94 2an1A 292 39.09 2dfuA 264 40.31 1g43A 160 40.57 b.2.2.2 22392 1xwnA 174 40.85 b.62.1.1 122404 2x2aA 165 41.58 1k5nB 100 41.62 b.1.1.2 77268 2wnwA 447 41.73 1vavA 222 41.75 b.29.1.18 108472 2wlwA 165 42.56 2d1wA 638 43.47 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 3f95A 193 43.92 1ejxC 567 46.97 b.92.1.1,c.1.9.2 83184,83185 1w9sA 142 48.16 b.18.1.10 114416 2x2dB 165 49.57 1n1tA 641 50.93 b.29.1.15,b.68.1.1 79821,79822 3loyA 633 51.28 2x25B 169 54.53 1fgjA 546 54.61 a.138.1.3 19679 1ms9A 648 56.16 b.29.1.15,b.68.1.1 85088,85089 2x7kA 166 56.60 1h0pA 182 60.90 b.62.1.1 76450 1o91A 178 63.20 b.22.1.1 92656 1gu3A 149 63.32 b.18.1.14 76350 2zl8A 638 63.72 b.30.2.1,d.17.2.1,d.17.2.1 154620,154621,154622 1kjvB 100 64.07 b.1.1.2 77423 1ln1A 214 66.24 d.129.3.2 74038 1iakA 199 66.47 b.1.1.2,d.19.1.1 21625,38199 1orvA 728 68.26 b.70.3.1,c.69.1.24 87354,87355 1ravA 127 69.76 b.61.1.1 27409 3duiA 135 69.93 2oqeA 660 72.55 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1jhnA 424 73.69 b.104.1.1,b.29.1.12 66722,70060 1rfs 139 74.03 2imjA 166 77.74 d.17.4.23 147725 1uldA 150 78.63 b.29.1.3 99545 1kbvA 327 80.13 b.6.1.3,b.6.1.3 68395,68396 2bitX 165 80.19 b.62.1.1 128590 1i4uA 181 80.94 b.60.1.1 61732 3kdjA 202 82.13 2acoA 173 82.81 2fnjA 226 82.96 b.29.1.22 133818 2bbsA 290 84.50 3k90A 193 85.91 1m5yA 408 86.13 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 3gdcA 288 87.70 1yndA 165 88.91 b.62.1.1 123721 3kdhA 190 89.68