# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 1.71e-24 3hbkA 245 3.99e-22 3immA 201 9.07e-18 2hykA 245 2.07e-12 1dypA 271 4.94e-12 b.29.1.2 24185 2ayhA 214 6.88e-12 b.29.1.2 24172 1gbgA 214 1.46e-11 b.29.1.2 24171 2vy0A 264 1.47e-11 3juuA 280 2.47e-11 2ayh 214 5.97e-11 2uwaA 274 9.19e-11 1upsA 420 1.28e-10 b.29.1.2,b.42.2.3 113394,113395 1gbg 214 3.38e-10 2w39A 298 4.56e-10 1o4yA 288 1.11e-09 b.29.1.2 92473 2cl2A 298 1.29e-09 1cpnA 208 1.86e-09 b.29.1.2 24175 3dgtA 280 1.91e-09 1umzA 278 3.93e-09 b.29.1.2 99639 3ilfA 268 4.31e-09 1mveA 243 2.42e-07 b.29.1.2 85140 3hr9A 241 3.90e-07 1ajkA 214 9.39e-06 b.29.1.2 24176 1ajoA 214 5.36e-05 b.29.1.2 24179 3hmyA 450 0.02308 1oq1A 223 0.02317 b.29.1.17 93408 3b3qE 197 0.02453 b.29.1.4 154813 2vu9A 444 0.03033 1c4rA 182 0.03039 b.29.1.4 24229 3bodA 178 0.03068 2r16A 182 0.03897 2durA 253 0.03950 2vxrA 482 0.04591 2zzjA 238 0.04800 1qu0A 191 0.05183 b.29.1.4 24225 2wjsA 608 0.05947 1a8dA 452 0.06233 b.29.1.6,b.42.4.2 24262,25607 1pz7A 204 0.07658 b.29.1.4 95405 2a6vA 226 0.09825 b.29.1.13 126312 2a6zA 222 0.1579 b.29.1.13 126319 2h0bA 184 0.1604 2uurA 245 0.2498 1sacA 204 0.2507 b.29.1.5 24237 1f5fA 205 0.2518 b.29.1.4 24222 1uaiA 224 0.2534 b.29.1.18 107761 3flpA 217 0.4366 1d2sA 170 0.4408 b.29.1.4 24221 2erfA 209 0.4440 b.29.1.4 132287 1shsA 147 0.4744 b.15.1.1 23675 2v73A 191 0.6112 1a8d 452 0.9293 1n1tA 641 1.634 b.29.1.15,b.68.1.1 79821,79822 2w08A 204 1.702 1gmeA 151 2.233 b.15.1.1 65305 1h30A 422 2.369 b.29.1.4,b.29.1.4 76604,76605 1uypA 432 2.670 b.29.1.19,b.67.2.3 100176,100177 1gv9A 260 2.886 b.29.1.13 70596 1y2tA 142 2.950 b.97.1.2 116407 2cwsA 237 3.051 2ofcA 142 3.696 2jd4A 383 3.832 1yifA 533 4.306 b.29.1.23,b.67.2.1 123283,123284 1lnsA 763 5.663 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1yq2A 1024 5.824 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 1ms9A 648 7.143 b.29.1.15,b.68.1.1 85088,85089 1gwmA 153 7.846 b.18.1.19 83348 1dykA 394 8.643 b.29.1.4,b.29.1.4 24223,24224 2r0hA 164 9.567 1guiA 155 10.87 b.18.1.14 76351 1x89A 178 11.18 b.60.1.1 121799 3gneA 252 13.10 2imjA 166 13.54 d.17.4.23 147725 1lcl 142 13.98 1c1lA 136 14.34 b.29.1.3 24219 1mzyA 333 14.80 b.6.1.3,b.6.1.3 103848,103849 2wnxA 170 14.84 2nn8A 138 14.91 b.29.1.3 138392 1wcuA 153 14.92 1x99A 145 16.19 b.97.1.2 114978 3dszA 186 16.30 2w68A 195 16.74 3b9cA 144 17.69 1i4uA 181 17.90 b.60.1.1 61732 1is3A 135 18.48 b.29.1.3 76773 3cmpA 198 18.52 1w6nA 134 18.70 b.29.1.3 114275 2wkkA 150 18.96 1w2tA 432 20.13 b.29.1.19,b.67.2.3 120607,120608 3emwA 217 20.39 3kf3A 509 20.84 2jk9A 212 21.01 2uxtA 451 21.85 2zhnA 148 22.05 1a78A 134 24.29 b.29.1.3 24212 1hdkA 141 24.66 b.29.1.3 65807 1ln1A 214 28.98 d.129.3.2 74038 1xsjA 778 29.39 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 2d6mA 159 29.49 1g0dA 695 29.60 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 2an1A 292 30.03 1j1lA 290 31.81 b.82.1.12 90766 2dfuA 264 32.48 2wewA 172 32.82 2ac1A 541 32.95 2oqeA 660 33.59 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1jhnA 424 33.86 b.104.1.1,b.29.1.12 66722,70060 2vzsA 1032 34.49 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153727,153728,153729,153730,153731 2camA 127 35.94 b.61.1.1 27407 1ravA 127 36.27 b.61.1.1 27409 2v3fA 505 38.79 b.71.1.2,c.1.8.3 152453,152454 2w1nA 238 41.03 1uxxX 133 41.37 b.18.1.10 100169 2bolA 314 41.68 3hx6A 570 41.69 1orvA 728 43.20 b.70.3.1,c.69.1.24 87354,87355 3hikA 237 43.42 3kf5A 512 44.39 3dtqA 186 44.73 2d1wA 638 45.75 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 1v04A 355 46.18 b.68.6.2 100240 1fgyA 127 46.18 b.55.1.1 26976 3g0bA 740 46.50 1w7cA 747 51.55 b.30.2.1,d.17.2.1,d.17.2.1 145814,145815,145816 2sliA 679 52.24 b.29.1.9,b.68.1.1 24274,27611 1h09A 338 54.31 b.109.1.1,c.1.8.8 83420,83421 2jbwA 386 54.60 c.69.1.41 147962 1avgI 142 58.13 b.60.1.3 27229 1bhgA 613 59.42 b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 1gzwA 134 59.56 b.29.1.3 90535 2zglA 167 60.71 1kjlA 146 60.81 b.29.1.3 118689 1g43A 160 63.88 b.2.2.2 22392 3jrqB 186 64.50 1hp1A 516 64.79 d.114.1.1,d.159.1.2 70976,70977 1vavA 222 66.34 b.29.1.18 108472 1fgjA 546 67.58 a.138.1.3 19679 1w6gA 646 69.26 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 2psoA 237 70.38 d.129.3.2 149824 3iesA 551 70.39 2yv8A 164 71.17 3gdcA 288 72.25 1x8qA 184 74.33 b.60.1.1 114966 2vw2A 697 74.73 1qwdA 177 74.91 b.60.1.1 96471 1uwwA 191 75.53 b.18.1.23 108079 2ealA 148 76.39 1bkzA 135 78.80 b.29.1.3 24202 2hu5A 582 79.89 b.69.7.2,c.69.1.33 136763,136764 1bec 238 82.97 1q47A 495 83.52 b.69.12.1 104532 1ypqA 135 84.02 d.169.1.1 123833 3cebA 194 84.97 2acoA 173 85.20 2ig6A 150 88.26 1y4wA 518 89.11 b.29.1.19,b.67.2.3 116470,116471