# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 9.70e-15 3hbkA 245 3.04e-13 3immA 201 6.96e-11 2hykA 245 3.02e-07 1dypA 271 7.55e-07 b.29.1.2 24185 2ayhA 214 7.69e-07 b.29.1.2 24172 1gbgA 214 8.53e-07 b.29.1.2 24171 2vy0A 264 2.00e-06 1upsA 420 2.88e-06 b.29.1.2,b.42.2.3 113394,113395 2ayh 214 3.08e-06 2uwaA 274 3.41e-06 3juuA 280 4.03e-06 1gbg 214 4.80e-06 2w39A 298 4.97e-06 3dgtA 280 5.02e-06 1cpnA 208 2.18e-05 b.29.1.2 24175 1umzA 278 2.28e-05 b.29.1.2 99639 1o4yA 288 2.82e-05 b.29.1.2 92473 2cl2A 298 3.28e-05 3ilfA 268 3.68e-05 3hr9A 241 0.000646 1mveA 243 0.003122 b.29.1.2 85140 1ajkA 214 0.003889 b.29.1.2 24176 1ajoA 214 0.01274 b.29.1.2 24179 1oq1A 223 0.2130 b.29.1.17 93408 2zzjA 238 0.4349 2wjsA 608 0.7987 3b3qE 197 0.9778 b.29.1.4 154813 2a6vA 226 0.9818 b.29.1.13 126312 1c4rA 182 1.145 b.29.1.4 24229 3bodA 178 1.233 2durA 253 1.371 2r16A 182 1.423 1pz7A 204 1.888 b.29.1.4 95405 1xsjA 778 2.063 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 2a6zA 222 3.159 b.29.1.13 126319 2h0bA 184 3.416 3hmyA 450 5.025 1sacA 204 5.056 b.29.1.5 24237 1qu0A 191 5.870 b.29.1.4 24225 1f5fA 205 6.396 b.29.1.4 24222 1uaiA 224 6.792 b.29.1.18 107761 3ei4B 436 7.020 2uurA 245 7.126 1yifA 533 7.286 b.29.1.23,b.67.2.1 123283,123284 1h30A 422 7.776 b.29.1.4,b.29.1.4 76604,76605 2v73A 191 8.241 1d2sA 170 9.390 b.29.1.4 24221 2uvfA 608 10.08 2erfA 209 10.73 b.29.1.4 132287 3bc9A 599 13.48 3hb9A 1150 14.03 3grhA 422 15.14 1gmeA 151 15.15 b.15.1.1 65305 1shsA 147 15.99 b.15.1.1 23675 3k1qA 1299 16.97 2w08A 204 17.91 1uypA 432 19.51 b.29.1.19,b.67.2.3 100176,100177 1y2tA 142 21.95 b.97.1.2 116407 1kbvA 327 22.03 b.6.1.3,b.6.1.3 68395,68396 2ofcA 142 24.47 2wbqA 358 24.52 1q47A 495 24.65 b.69.12.1 104532 1mzyA 333 25.78 b.6.1.3,b.6.1.3 103848,103849 3gdcA 288 26.50 1gv9A 260 27.91 b.29.1.13 70596 2uxtA 451 31.40 3hx6A 570 32.89 3acpA 417 34.45 2vxrA 482 35.62 1elvA 333 36.47 b.47.1.2,g.18.1.1 59454,59455 2nt0A 497 37.34 b.71.1.2,c.1.8.3 138561,138562 2gc7A 386 37.61 b.69.2.1 134954 2vhfA 374 38.28 1w6gA 646 38.83 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 1w2tA 432 38.87 b.29.1.19,b.67.2.3 120607,120608 2cwsA 237 42.84 2wdcA 562 43.46 3pcgM 238 45.04 b.3.6.1 22742 3flpA 217 45.82 1n1tA 641 47.16 b.29.1.15,b.68.1.1 79821,79822 3hbzA 342 49.88 2w20A 471 50.82 2imjA 166 53.83 d.17.4.23 147725 1x89A 178 54.73 b.60.1.1 121799 1orvA 728 55.31 b.70.3.1,c.69.1.24 87354,87355 2dfuA 264 55.83 3ebhA 889 57.14 1gwmA 153 58.05 b.18.1.19 83348 1avgI 142 58.85 b.60.1.3 27229 3emwA 217 60.76 2ih8A 559 60.95 b.6.1.3,b.6.1.3,b.6.1.3 137407,137408,137409 2qf7A 1165 60.97 2d1wA 638 61.51 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 1wybA 392 63.02 e.3.1.1 145837 2dcfA 392 63.24 e.3.1.1 146485 3gneA 252 65.18 3dszA 186 65.65 3cmpA 198 66.10 3cblA 377 66.91 1evuA 731 67.52 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 21883,22175,22176,37113 1clcA 639 67.71 a.102.1.2,b.1.18.2 18835,21872 2wnxA 170 68.40 1oacA 727 68.95 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1guiA 155 69.56 b.18.1.14 76351 2v3fA 505 70.52 b.71.1.2,c.1.8.3 152453,152454 2jk9A 212 70.84 1zjkA 403 71.29 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 1jhnA 424 71.36 b.104.1.1,b.29.1.12 66722,70060 3bxwA 393 74.41 2ot4A 525 75.20 1a78A 134 76.00 b.29.1.3 24212 1p2hA 571 76.04 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 3hrpA 409 76.30 3fo3A 525 78.52 3k7mX 431 78.63 3b9cA 144 80.19 1buuA 168 80.26 d.169.1.1,h.1.1.1 42366,45388 2nn8A 138 82.14 b.29.1.3 138392 1ockA 412 82.28 c.117.1.1 86802 1wcuA 153 82.55 1e3dB 542 82.75 e.18.1.1 59189 1ln1A 214 82.87 d.129.3.2 74038 1bhgA 613 83.80 b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 2bw4A 340 84.84 b.6.1.3,b.6.1.3 129320,129321 3hikA 237 85.31 1xzwA 426 85.49 b.1.12.1,d.159.1.1 116270,116271 1qwnA 1045 85.90 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1qwdA 177 86.84 b.60.1.1 96471 3jrqB 186 88.55 1c1lA 136 89.14 b.29.1.3 24219 2bmaA 470 89.18 2ppeA 343 89.27 b.6.1.3,b.6.1.3 149769,149770 1amuA 563 89.35 e.23.1.1 43351 3e7jA 749 89.87