# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 8.42e-26 3hbkA 245 2.15e-23 3immA 201 1.73e-18 2hykA 245 6.05e-13 1dypA 271 2.11e-12 b.29.1.2 24185 2ayhA 214 2.50e-12 b.29.1.2 24172 1gbgA 214 4.81e-12 b.29.1.2 24171 2vy0A 264 4.86e-12 3juuA 280 1.09e-11 2ayh 214 2.27e-11 2uwaA 274 3.16e-11 1upsA 420 4.15e-11 b.29.1.2,b.42.2.3 113394,113395 1gbg 214 1.08e-10 2w39A 298 1.51e-10 3dgtA 280 4.22e-10 2cl2A 298 5.16e-10 1cpnA 208 6.86e-10 b.29.1.2 24175 1o4yA 288 7.76e-10 b.29.1.2 92473 1umzA 278 8.26e-10 b.29.1.2 99639 3ilfA 268 1.94e-09 1mveA 243 1.07e-07 b.29.1.2 85140 3hr9A 241 1.20e-07 1ajkA 214 7.32e-06 b.29.1.2 24176 1ajoA 214 1.92e-05 b.29.1.2 24179 3hmyA 450 0.01714 3b3qE 197 0.01899 b.29.1.4 154813 1c4rA 182 0.02160 b.29.1.4 24229 3bodA 178 0.02408 1oq1A 223 0.02447 b.29.1.17 93408 2vu9A 444 0.02787 2r16A 182 0.02824 2zzjA 238 0.03185 2durA 253 0.04111 1qu0A 191 0.05324 b.29.1.4 24225 1pz7A 204 0.05700 b.29.1.4 95405 2vxrA 482 0.06140 1a8dA 452 0.06809 b.29.1.6,b.42.4.2 24262,25607 2wjsA 608 0.09192 2a6vA 226 0.1060 b.29.1.13 126312 2h0bA 184 0.1327 2a6zA 222 0.1634 b.29.1.13 126319 1sacA 204 0.2327 b.29.1.5 24237 2uurA 245 0.3751 1f5fA 205 0.3840 b.29.1.4 24222 1shsA 147 0.3998 b.15.1.1 23675 3flpA 217 0.5545 2erfA 209 0.5736 b.29.1.4 132287 1uaiA 224 0.5930 b.29.1.18 107761 1d2sA 170 0.6052 b.29.1.4 24221 2v73A 191 0.6286 1a8d 452 0.9854 1gmeA 151 1.552 b.15.1.1 65305 1n1tA 641 1.819 b.29.1.15,b.68.1.1 79821,79822 2w08A 204 2.046 1y2tA 142 2.667 b.97.1.2 116407 1gv9A 260 3.138 b.29.1.13 70596 1yifA 533 3.148 b.29.1.23,b.67.2.1 123283,123284 1h30A 422 3.183 b.29.1.4,b.29.1.4 76604,76605 2ofcA 142 3.737 2jd4A 383 4.071 1uypA 432 4.211 b.29.1.19,b.67.2.3 100176,100177 1lnsA 763 4.404 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1yq2A 1024 4.723 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 1x89A 178 7.071 b.60.1.1 121799 1xsjA 778 8.709 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 2cwsA 237 8.768 3dszA 186 8.799 1guiA 155 9.168 b.18.1.14 76351 2imjA 166 10.61 d.17.4.23 147725 2uxtA 451 10.74 1ms9A 648 10.89 b.29.1.15,b.68.1.1 85088,85089 1gwmA 153 11.75 b.18.1.19 83348 3cmpA 198 11.75 3emwA 217 12.77 3gneA 252 13.11 2jk9A 212 13.39 1mzyA 333 13.58 b.6.1.3,b.6.1.3 103848,103849 2wewA 172 13.70 3hikA 237 13.93 2wnxA 170 14.83 1x99A 145 16.53 b.97.1.2 114978 2oqeA 660 16.63 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1jhnA 424 18.21 b.104.1.1,b.29.1.12 66722,70060 1j1lA 290 18.57 b.82.1.12 90766 1i4uA 181 21.01 b.60.1.1 61732 1dykA 394 21.60 b.29.1.4,b.29.1.4 24223,24224 2an1A 292 21.66 2w68A 195 21.77 1uxxX 133 22.04 b.18.1.10 100169 1orvA 728 22.20 b.70.3.1,c.69.1.24 87354,87355 3b9cA 144 23.24 1w6nA 134 23.70 b.29.1.3 114275 2d1wA 638 24.26 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 1wcuA 153 24.41 2nn8A 138 24.70 b.29.1.3 138392 1c1lA 136 26.47 b.29.1.3 24219 2wkkA 150 28.29 3kf3A 509 28.43 1ravA 127 28.46 b.61.1.1 27409 3jrqB 186 29.41 1a78A 134 30.24 b.29.1.3 24212 1g0dA 695 30.76 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 2v3fA 505 31.17 b.71.1.2,c.1.8.3 152453,152454 2camA 127 31.18 b.61.1.1 27407 1lcl 142 31.56 1ln1A 214 31.84 d.129.3.2 74038 2zhnA 148 32.48 1w7cA 747 32.99 b.30.2.1,d.17.2.1,d.17.2.1 145814,145815,145816 1uwwA 191 33.34 b.18.1.23 108079 3hx6A 570 36.36 2d6mA 159 37.09 1is3A 135 37.25 b.29.1.3 76773 2w1nA 238 37.40 3gdcA 288 39.17 2r0hA 164 41.05 1qwdA 177 42.15 b.60.1.1 96471 1w6gA 646 43.00 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 2vzsA 1032 43.57 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153727,153728,153729,153730,153731 1fgjA 546 44.26 a.138.1.3 19679 2ac1A 541 45.14 2bolA 314 45.83 3ikwA 374 47.12 1hp1A 516 47.60 d.114.1.1,d.159.1.2 70976,70977 3dtqA 186 50.14 2dfuA 264 50.16 1fgyA 127 53.33 b.55.1.1 26976 1w2tA 432 54.25 b.29.1.19,b.67.2.3 120607,120608 1bhgA 613 54.37 b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 2sliA 679 54.87 b.29.1.9,b.68.1.1 24274,27611 3kf5A 512 58.23 3gyrA 612 58.36 1avgI 142 58.88 b.60.1.3 27229 1hdkA 141 60.12 b.29.1.3 65807 2jbwA 386 61.77 c.69.1.41 147962 1w9sA 142 61.94 b.18.1.10 114416 1g43A 160 65.45 b.2.2.2 22392 3iesA 551 69.51 1h09A 338 70.10 b.109.1.1,c.1.8.8 83420,83421 1dueA 242 71.45 b.47.1.1 76140 3dorA 583 73.55 1gzwA 134 79.33 b.29.1.3 90535 2wnwA 447 79.91 3f95A 193 79.92 1n9eA 787 80.22 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 2fnjA 226 80.69 b.29.1.22 133818 1bec 238 81.21 1lyqA 104 81.48 b.1.18.17 78302 1q47A 495 82.42 b.69.12.1 104532 2v24A 208 84.91 1o91A 178 85.68 b.22.1.1 92656 2zl8A 638 87.29 b.30.2.1,d.17.2.1,d.17.2.1 154620,154621,154622 1q98A 165 88.58 c.47.1.10 96253 2b9lA 394 89.38 1oacA 727 90.00 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003