# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3h3lA 241 7.30e-28 3hbkA 245 2.04e-25 3immA 201 4.12e-20 2hykA 245 5.14e-14 2ayhA 214 3.00e-13 b.29.1.2 24172 2vy0A 264 3.57e-13 1dypA 271 3.61e-13 b.29.1.2 24185 1gbgA 214 7.13e-13 b.29.1.2 24171 3juuA 280 2.11e-12 2ayh 214 2.47e-12 2uwaA 274 3.80e-12 1upsA 420 3.98e-12 b.29.1.2,b.42.2.3 113394,113395 1gbg 214 2.30e-11 2w39A 298 4.86e-11 3dgtA 280 7.61e-11 1cpnA 208 7.97e-11 b.29.1.2 24175 2cl2A 298 1.04e-10 1umzA 278 1.15e-10 b.29.1.2 99639 1o4yA 288 1.36e-10 b.29.1.2 92473 3ilfA 268 6.35e-10 3hr9A 241 1.63e-08 1mveA 243 1.81e-08 b.29.1.2 85140 1ajkA 214 1.37e-06 b.29.1.2 24176 1ajoA 214 8.42e-06 b.29.1.2 24179 3hmyA 450 0.008273 2wjsA 608 0.01257 3b3qE 197 0.01774 b.29.1.4 154813 2zzjA 238 0.02156 1oq1A 223 0.02738 b.29.1.17 93408 1c4rA 182 0.03418 b.29.1.4 24229 2durA 253 0.03528 1a8dA 452 0.03643 b.29.1.6,b.42.4.2 24262,25607 2vxrA 482 0.03806 1pz7A 204 0.04021 b.29.1.4 95405 3bodA 178 0.04143 2r16A 182 0.04246 2vu9A 444 0.04278 1qu0A 191 0.05577 b.29.1.4 24225 2h0bA 184 0.1586 1sacA 204 0.2416 b.29.1.5 24237 2erfA 209 0.2428 b.29.1.4 132287 2a6vA 226 0.2752 b.29.1.13 126312 1uaiA 224 0.2812 b.29.1.18 107761 2uurA 245 0.3326 1shsA 147 0.3340 b.15.1.1 23675 2a6zA 222 0.4267 b.29.1.13 126319 1gmeA 151 0.4632 b.15.1.1 65305 3flpA 217 0.4872 1a8d 452 0.5457 1f5fA 205 0.6348 b.29.1.4 24222 1d2sA 170 0.6573 b.29.1.4 24221 2v73A 191 0.6946 2w08A 204 1.066 1y2tA 142 1.870 b.97.1.2 116407 1lnsA 763 2.053 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1h30A 422 2.181 b.29.1.4,b.29.1.4 76604,76605 2ofcA 142 2.248 2jd4A 383 2.521 1xsjA 778 2.573 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 1uypA 432 3.024 b.29.1.19,b.67.2.3 100176,100177 1n1tA 641 3.369 b.29.1.15,b.68.1.1 79821,79822 1gwmA 153 4.670 b.18.1.19 83348 1gv9A 260 5.622 b.29.1.13 70596 1ms9A 648 7.134 b.29.1.15,b.68.1.1 85088,85089 2cwsA 237 7.139 1x99A 145 8.007 b.97.1.2 114978 1mzyA 333 8.055 b.6.1.3,b.6.1.3 103848,103849 2imjA 166 8.493 d.17.4.23 147725 1uxxX 133 8.499 b.18.1.10 100169 1yifA 533 9.257 b.29.1.23,b.67.2.1 123283,123284 1wcuA 153 9.488 1yq2A 1024 10.22 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 1dykA 394 10.27 b.29.1.4,b.29.1.4 24223,24224 1jhnA 424 10.72 b.104.1.1,b.29.1.12 66722,70060 1x89A 178 13.81 b.60.1.1 121799 3dszA 186 15.81 1j1lA 290 16.08 b.82.1.12 90766 1orvA 728 16.46 b.70.3.1,c.69.1.24 87354,87355 3gneA 252 17.31 1guiA 155 17.55 b.18.1.14 76351 3emwA 217 17.65 2nn8A 138 18.03 b.29.1.3 138392 3gdcA 288 19.37 3gyrA 612 20.47 1ln1A 214 22.02 d.129.3.2 74038 2oqeA 660 22.92 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 2wkkA 150 23.35 2jbwA 386 24.83 c.69.1.41 147962 2wnxA 170 25.85 2uxtA 451 29.47 2v3fA 505 29.50 b.71.1.2,c.1.8.3 152453,152454 1lcl 142 30.04 1kbvA 327 30.67 b.6.1.3,b.6.1.3 68395,68396 2d1wA 638 30.71 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 2an1A 292 30.79 3hx6A 570 30.89 2r0hA 164 31.27 3cmpA 198 32.32 1c1lA 136 33.75 b.29.1.3 24219 1i4uA 181 34.34 b.60.1.1 61732 1a78A 134 36.35 b.29.1.3 24212 3hikA 237 36.55 3dorA 583 36.76 3ikwA 374 36.94 1h09A 338 37.15 b.109.1.1,c.1.8.8 83420,83421 2w68A 195 39.67 2wnwA 447 40.41 2sliA 679 41.20 b.29.1.9,b.68.1.1 24274,27611 1is3A 135 41.42 b.29.1.3 76773 1w6nA 134 45.31 b.29.1.3 114275 3kf3A 509 45.56 1uwwA 191 45.72 b.18.1.23 108079 3jrqB 186 46.58 1ravA 127 47.05 b.61.1.1 27409 1g0dA 695 48.95 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 1pb7A 292 49.43 c.94.1.1 88025 2jk9A 212 49.61 2dfuA 264 50.40 2bolA 314 53.76 1w2tA 432 55.27 b.29.1.19,b.67.2.3 120607,120608 1fgyA 127 56.19 b.55.1.1 26976 2e8iA 392 56.32 2camA 127 56.89 b.61.1.1 27407 1w7cA 747 60.44 b.30.2.1,d.17.2.1,d.17.2.1 145814,145815,145816 2ac1A 541 61.35 1g43A 160 61.68 b.2.2.2 22392 1w9sA 142 64.39 b.18.1.10 114416 2q1fA 1022 65.77 1avgI 142 66.36 b.60.1.3 27229 2d6mA 159 66.38 3dtqA 186 66.83 3loyA 633 68.73 2pil 159 69.64 1hdkA 141 71.40 b.29.1.3 65807 2v05A 311 71.79 3b9cA 144 72.56 2vw2A 697 74.25 1aozA 552 74.76 b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 1hp1A 516 75.52 d.114.1.1,d.159.1.2 70976,70977 2d73A 738 76.74 1fgjA 546 76.96 a.138.1.3 19679 3hrpA 409 77.58 1rwrA 301 78.14 b.80.1.11 97990 1v04A 355 78.66 b.68.6.2 100240 1qwdA 177 81.33 b.60.1.1 96471 3le2A 393 81.64 2bbsA 290 82.64 2cn3A 737 82.71 2kd2A 94 84.28 1c3hA 137 87.86 b.22.1.1 90405 2wewA 172 88.88 3iesA 551 89.60