# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3hbkA 232 8.256e-33 3h3lA 233 1.369e-30 3immA 198 5.857e-23 1hj0A 42 6.399e-02 j.86.1.1 65842 2vi6A 56 7.384e-01 2zuxA 583 1.762e+00 3a03A 54 1.911e+00 2q7aA 153 1.977e+00 3epuA 135 2.609e+00 1jsxA 194 2.676e+00 c.66.1.20 71846 3a02A 52 2.896e+00 1yrnA 50 2.897e+00 1akhA a.4.1.1 15981 1urfA 82 3.009e+00 a.2.6.1 99827 1p30A 892 3.911e+00 b.121.2.2 93964 b.121.2.2 93965 1fmtA 309 4.112e+00 1fmtA b.46.1.1 25758 c.65.1.1 34174 3a01B 58 4.592e+00 1okjA 220 4.661e+00 c.55.1.9 103998 c.55.1.9 103999 1ryoA 325 5.523e+00 c.94.1.2 98108 1p2zA 888 5.984e+00 b.121.2.2 93962 b.121.2.2 93963 1y7xA 114 6.570e+00 2aysA 341 7.067e+00 c.94.1.2 127570 1a0aA 64 7.325e+00 1a0aA a.38.1.1 17138 1wi3A 72 7.626e+00 a.4.1.1 114660 1on3A 518 7.809e+00 c.14.1.4 87107 c.14.1.4 87108 1s3iA 308 7.822e+00 b.46.1.1 98435 c.65.1.1 98436 3fcxA 269 8.856e+00 3cmyA 61 9.450e+00 2blnA 299 9.490e+00 b.46.1.1 128734 c.65.1.1 128735 1pm4A 118 1.062e+01 b.135.1.1 94891 1ruyH 325 1.109e+01 b.19.1.2 97883 1nnt 329 1.127e+01 1nnt 1z5oA 236 1.155e+01 1rv0H 325 1.278e+01 b.19.1.2 97895 1rvtH 325 1.278e+01 b.19.1.2 97931 3ihjA 462 1.434e+01 2ac7A 221 1.500e+01 c.56.2.1 126543 3fkmX 121 1.587e+01 3e1yA 381 1.604e+01 1v72A 346 1.626e+01 c.67.1.1 119860 1nhcA 337 1.627e+01 b.80.1.3 91879 2dohC 25 1.639e+01 2z2mC 126 1.639e+01 d.11.1.1 153944 d.11.1.1 153945 2b6dA 342 1.699e+01 c.94.1.2 127985 1ehxA 95 1.730e+01 1ehxA b.1.18.13 21950 1p15A 246 1.920e+01 c.45.1.2 93894 1skoA 120 1.955e+01 d.110.7.1 105676 1i5kC 27 2.022e+01 3dsmA 328 2.030e+01 1oksA 54 2.047e+01 a.8.5.1 93271 1du0A 54 2.148e+01 2hddA a.4.1.1 15974 1p9sA 301 2.156e+01 b.47.1.4 87999 1a8e 330 2.200e+01 1cb6A 1b6rA 350 2.213e+01 1b6rA b.84.2.1 28241 c.30.1.1 31648 d.142.1.2 41493 1kz0A 17 2.228e+01 j.92.1.1 68886 1yixA 266 2.229e+01 c.1.9.12 123371 3he7D 241 2.234e+01 1az6A 37 2.248e+01 g.3.8.1 44184 1jrhI 96 2.273e+01 1jrhI b.1.2.1 22059 2da7A 72 2.301e+01 2qaiA 92 2.319e+01 1y10A 361 2.326e+01 1dl5A 318 2.352e+01 1dl5A c.66.1.7 64720 d.197.1.1 64721 2ilrA 250 2.371e+01 3gneA 244 2.402e+01 1d1qA 160 2.408e+01 1dg9A c.44.1.1 32642 3lv4A 442 2.439e+01 1akhA 50 2.449e+01 1akhA a.4.1.1 15980 2pzfA 225 2.455e+01 1c7nA 395 2.548e+01 1d2fA c.67.1.3 34413 1d3kA 330 2.576e+01 1nnt c.94.1.2 35889 1u24A 315 2.588e+01 c.45.1.4 112968 2kp6A 80 2.597e+01 1jlnA 298 2.709e+01 1pty c.45.1.2 63172 3lxjA 136 2.723e+01 1jg1A 216 2.728e+01 c.66.1.7 66661 3daiA 131 2.748e+01 2dleA 105 2.764e+01 1kngA 145 2.801e+01 c.47.1.10 72777 2obeA 916 2.814e+01 1jubA 312 2.823e+01 c.1.4.1 90908 3e05A 189 2.827e+01 2a6hA 230 2.860e+01 d.74.3.1 126260 d.181.1.1 126261 3ddoA 241 2.903e+01 3k5iA 382 2.944e+01 1rpmA 279 2.959e+01 2shpA c.45.1.2 32679 2amdA 310 2.975e+01 1r3jC 104 3.001e+01 f.14.1.1 96932 1q8bA 94 3.028e+01 d.58.4.6 96201 1lkvX 214 3.093e+01 a.118.14.1 73980 1z5nA 235 3.137e+01 2e5yA 134 3.152e+01 1q2wA 296 3.166e+01 b.47.1.4 88355 1jqfA 330 3.182e+01 c.94.1.2 67086 1zroA 589 3.191e+01 a.264.1.1 125551 a.264.1.1 125552 1azsB 190 3.202e+01 1azsA d.58.29.1 39423 2zc3C 126 3.202e+01 d.11.1.1 154325 d.11.1.1 154326 3g9dA 291 3.227e+01 2regA 291 3.253e+01 3kaxA 366 3.279e+01 3eeiA 232 3.284e+01 2rinA 289 3.303e+01 2yqzA 262 3.304e+01 1h8eH 90 3.306e+01 1e79H b.93.1.1 60757 3a01A 79 3.377e+01 2h8gA 247 3.478e+01 2f9iB 261 3.497e+01 1gydB 316 3.500e+01 b.67.2.1 70751 1lvoA 300 3.551e+01 b.47.1.4 74284 1g7fA 298 3.558e+01 1pty c.45.1.2 60330 1l1zA 264 3.586e+01 a.156.1.2 75911 b.113.1.1 75912 g.39.1.8 75913 1pt1A 118 3.587e+01 b.52.2.1 95084 2j1nA 347 3.643e+01 3hhyA 257 3.649e+01 2efjA 349 3.670e+01 2bzlA 285 3.679e+01 1enh 55 3.690e+01 2hddA 3lvaA 235 3.751e+01 1c76A 122 3.762e+01 2sak d.15.5.1 37718 1r0kA 381 3.812e+01 a.69.3.1 104723 c.2.1.3 104724 d.81.1.3 104725 1vetA 123 3.862e+01 d.110.7.1 108553 1vkdA 328 3.867e+01 b.67.2.4 108644 1ygaA 337 3.916e+01 1kxuA 277 3.946e+01 a.74.1.1 18358 a.74.1.1 18359 3hmhA 140 3.946e+01 2ossA 128 3.977e+01