# List of top-scoring protein chains for t2k.100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3h3lA 241 4.34e-29 3hbkA 245 1.47e-28 3immA 201 3.11e-22 2a6zA 222 1.00e-04 b.29.1.13 126319 1epwA 1290 1.02e-03 b.29.1.6 24269 b.42.4.2 25614 d.92.1.7 40305 h.4.2.1 45785 1oq1A 223 5.45e-03 b.29.1.17 93408 1qu0A 191 1.87e-02 1dykA b.29.1.4 24225 1dykA 394 6.08e-02 1dykA b.29.1.4 24223 b.29.1.4 24224 1gv9A 260 1.20e-01 b.29.1.13 70596 3ilfA 268 1.53e-01 1dypA 271 1.62e-01 1dypA b.29.1.2 24185 2uwaA 274 2.13e-01 1o4yA 288 2.28e-01 b.29.1.2 92473 1ux6A 350 2.31e-01 b.29.1.16 100145 g.75.1.1 100146 1ca1 370 2.58e-01 1ca1 1ca1A 370 2.58e-01 a.124.1.1 19340 b.12.1.3 23648 1yo8A 634 2.61e-01 1kdkA 177 2.87e-01 b.29.1.4 72351 1ooyA 481 3.49e-01 c.124.1.3 93388 c.124.1.2 93389 2ayh 214 3.65e-01 1axkA 2ayhA 214 3.65e-01 b.29.1.2 24172 1mveA 243 3.75e-01 b.29.1.2 85140 1d2sA 170 3.75e-01 1d2sA b.29.1.4 24221 1hdkA 141 4.07e-01 b.29.1.3 65807 1lcl 142 4.08e-01 1lcl 1f5fA 205 4.47e-01 1d2sA b.29.1.4 24222 2wxuA 370 4.88e-01 2vxrA 482 6.61e-01 2r16A 182 6.99e-01 3juuA 280 7.43e-01 1diwA 441 8.35e-01 1a8d b.29.1.6 24264 b.42.4.2 25609 1vclA 432 9.09e-01 b.42.2.1 108498 b.42.2.1 108499 d.281.1.1 108500 3b9cA 144 9.85e-01 2vu9A 444 9.99e-01 3hr9A 241 1.03e+00 1a8d 452 1.10e+00 1a8d 1a8dA 452 1.10e+00 b.29.1.6 24262 b.42.4.2 25607 2cwsA 237 1.11e+00 1d0hA 469 1.16e+00 1a8d b.29.1.6 24265 b.42.4.2 25610 2wjrA 214 1.21e+00 2hykA 245 1.31e+00 1smdA 496 1.40e+00 b.71.1.1 27768 c.1.8.1 28755 1smd 496 1.40e+00 1smd 3hmyA 450 1.41e+00 1upsA 420 1.41e+00 b.29.1.2 113394 b.42.2.3 113395 1uaiA 224 1.45e+00 b.29.1.18 107761 2a6vA 226 1.49e+00 b.29.1.13 126312 1khoA 370 1.71e+00 a.124.1.1 72489 b.12.1.3 72490 1erjA 393 1.97e+00 1erjA b.69.4.1 27660 3butA 136 1.98e+00 2erfA 209 2.07e+00 b.29.1.4 132287 2jd4A 383 2.22e+00 1umzA 278 2.39e+00 b.29.1.2 99639 3gneA 252 2.62e+00 1bucA 383 2.72e+00 3mdeA a.29.3.1 16590 e.6.1.1 42851 1uuzA 137 2.81e+00 d.233.1.1 100024 3e7jA 749 2.88e+00 2fuqA 747 2.91e+00 3dhpA 496 2.98e+00 b.71.1.1 157725 c.1.8.1 157726 1cpnA 208 3.08e+00 b.29.1.2 24175 2c4xA 260 3.13e+00 1wmxA 205 3.23e+00 b.18.1.24 109418 2zglA 167 3.28e+00 1axkA 394 3.42e+00 1axkA b.29.1.2 24181 b.29.1.11 24315 1gwmA 153 3.61e+00 b.18.1.19 83348 2zhnA 148 3.86e+00 2ealA 148 4.29e+00 1e87A 118 4.54e+00 1b6e d.169.1.1 42327 3etpA 187 4.80e+00 2f99A 153 4.85e+00 d.17.4.9 147011 3ecqA 1531 5.20e+00 2yv8A 164 5.23e+00 1gwyA 175 5.39e+00 b.97.1.1 83356 2uurA 245 5.43e+00 1gnyA 153 5.64e+00 b.18.1.11 65404 3hupA 130 5.64e+00 2w68A 195 5.65e+00 1h3iA 293 5.72e+00 b.76.2.1 76635 b.85.7.1 76636 2nw2B 243 6.01e+00 2zzjA 238 6.54e+00 3d3aA 612 6.94e+00 1gbg 214 7.22e+00 1axkA 1gbgA 214 7.22e+00 b.29.1.2 24171 3ij8A 496 7.27e+00 1j1lA 290 7.38e+00 b.82.1.12 90766 2h0bA 184 7.60e+00 2c3gA 98 7.70e+00 3db5A 151 7.86e+00 2nv4A 147 7.95e+00 1t6gC 184 8.19e+00 b.29.1.11 106569 1dg6A 191 8.20e+00 1d4vB b.22.1.1 23883 1d1rA 116 8.28e+00 1d1rA d.64.1.1 39548 1zoxA 113 8.32e+00 1kit 757 8.38e+00 1kit 1ynaA 194 8.45e+00 b.29.1.11 24335 1ncwL 219 8.76e+00 b.1.1.1 85557 b.1.1.2 85558 1qw1A 121 8.92e+00 b.34.1.2 145772 2v73A 191 8.97e+00 1w0pA 781 9.08e+00 b.29.1.8 109038 b.29.1.8 109039 b.68.1.1 109040 2r0hA 164 9.30e+00 2d93A 134 9.38e+00 1ww7A 160 9.80e+00 3iswA 99 1.00e+01 1bymA 97 1.01e+01 1bi0 b.34.1.2 24458 1efuA 385 1.03e+01 1efcA b.43.3.1 25682 b.44.1.1 25722 c.37.1.8 32115 2w39A 298 1.06e+01 1xaoA 121 1.08e+01 1avaA 403 1.11e+01 1jdc b.71.1.1 27797 c.1.8.1 28784 1d7qA 143 1.13e+01 1d7qA b.40.4.5 25331 1h4gA 207 1.17e+01 b.29.1.11 70863 3bywA 177 1.22e+01 2cl2A 298 1.25e+01 1amy 403 1.25e+01 1jdc 1is3A 135 1.26e+01 b.29.1.3 76773 1sq9A 397 1.29e+01 b.69.4.1 105889 1bd2D 204 1.33e+01 1tcrA b.1.1.1 20622 b.1.1.2 21557 2c78A 405 1.35e+01 b.43.3.1 130037 b.44.1.1 130038 c.37.1.8 130039 1rhfA 182 1.38e+01 b.1.1.1 97469 b.1.1.4 97470 1d4vB 163 1.40e+01 1d4vB b.22.1.1 23884 2vphA 100 1.41e+01 3gnmL 219 1.48e+01 1efcA 393 1.53e+01 1efcA b.43.3.1 25680 b.44.1.1 25720 c.37.1.8 32113 1fm5A 199 1.54e+01 1fm5A d.169.1.1 42330 2dfuA 264 1.59e+01 3ejaA 208 1.64e+01 2brqA 97 1.64e+01 b.1.18.10 129008 2p8eA 307 1.67e+01 1hbq 183 1.74e+01 1aqb 1b2iA 83 1.76e+01 5hpgA g.14.1.1 44640 2rh0A 157 1.76e+01 3ks7A 397 1.78e+01 2go3A 267 1.84e+01 d.14.1.7 135422 d.14.1.7 135423 1fx5A 242 1.88e+01 1led b.29.1.1 24135 1p42A 270 1.91e+01 d.14.1.7 87754 d.14.1.7 87755 2dtr 226 1.92e+01 1bi0 2ajuL 216 1.92e+01 3flpA 217 1.94e+01 1ajoA 214 1.95e+01 1axkA b.29.1.2 24179 1d2eA 397 1.95e+01 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 3bp5A 117 1.96e+01 b.1.1.1 155462 1vjuA 309 1.99e+01 d.248.1.1 100835 1a4kA 217 2.00e+01 8fabA b.1.1.1 20236 b.1.1.2 21248 1h8eA 510 2.02e+01 1skyB a.69.1.1 60738 b.49.1.1 60739 c.37.1.11 60740 2j9jA 99 2.04e+01 2j2zB 173 2.12e+01 b.2.3.2 145642 2or0A 414 2.20e+01 1npuA 117 2.20e+01 b.1.1.1 92038 2je6I 251 2.20e+01 b.40.4.5 147995 b.84.4.2 147996 d.51.1.1 147997 2iyeA 263 2.27e+01 2oxgA 108 2.27e+01 3km5A 180 2.28e+01 3bp6A 117 2.30e+01 2oyzA 94 2.36e+01 b.82.1.22 149082 3bikB 134 2.38e+01 b.1.1.1 155309 2pygA 377 2.42e+01 1kt6A 183 2.46e+01 b.60.1.1 84466 1aipA 405 2.46e+01 1efcA b.43.3.1 25697 b.44.1.1 25737 c.37.1.8 32132 1jhnA 424 2.46e+01 b.29.1.12 70060 b.104.1.1 66722 1axsA 211 2.48e+01 8fabA b.1.1.1 20200 b.1.1.2 21216 1mpuA 138 2.48e+01 d.169.1.1 85040 3e0cA 1140 2.50e+01 1a3k 137 2.52e+01 1a3k 1vavA 222 2.54e+01 b.29.1.18 108472 2d6mA 159 2.56e+01 3l9yA 154 2.58e+01 2vqiA 515 2.58e+01 2ismA 352 2.60e+01 3gzuC 397 2.67e+01 1q25A 432 2.68e+01 b.64.1.1 104493 b.64.1.1 104494 b.64.1.1 104495 3e9tA 114 2.69e+01 3kz4C 397 2.73e+01 1flrL 219 2.74e+01 8fabA b.1.1.1 19904 b.1.1.2 20998 2j04A 588 2.75e+01 2as9A 210 2.78e+01 1iktA 120 2.79e+01 d.106.1.1 66188 3k2iA 422 2.79e+01 2w0pA 94 2.83e+01 b.1.18.10 153738 1dbhA 354 2.88e+01 1awe a.87.1.1 18514 b.55.1.1 26967 3c8xA 206 2.89e+01 3ei3A 1158 2.90e+01 1qhdA 398 2.91e+01 1qhdA a.115.1.2 63324 b.19.1.1 63325 2c1iA 431 2.93e+01 c.6.2.3 129636 d.341.1.1 129637 1exmA 405 2.98e+01 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 2vy0A 264 2.99e+01 1a4jA 217 2.99e+01 8fabA b.1.1.1 20232 b.1.1.2 21244 1mppA 361 2.99e+01 b.50.1.2 26856 3l4yA 875 3.03e+01 2zuyA 620 3.11e+01 3iqsA 189 3.11e+01 1y4wA 518 3.13e+01 b.29.1.19 116470 b.67.2.3 116471 3exzA 154 3.15e+01 1f97A 212 3.15e+01 1f97A b.1.1.1 19763 b.1.1.4 21764 1n62A 166 3.18e+01 a.56.1.1 80090 d.15.4.2 80091 2sli 679 3.21e+01 2sli 2sliA 679 3.21e+01 b.29.1.9 24274 b.68.1.1 27611 1behA 187 3.23e+01 1a44 b.17.1.1 23700 1guiA 155 3.23e+01 b.18.1.14 76351 1xwnA 174 3.23e+01 b.62.1.1 122404 3eadA 137 3.24e+01 2hi2A 158 3.26e+01 3cniA 156 3.27e+01 2jllA 389 3.36e+01 1hx0A 496 3.38e+01 b.71.1.1 61346 c.1.8.1 61347 1nfdA 203 3.38e+01 1tcrA b.1.1.1 20612 b.1.1.2 21550 2jdiA 510 3.39e+01 a.69.1.1 145683 b.49.1.1 145684 c.37.1.11 145685 2oztA 332 3.42e+01 1ikpA 613 3.44e+01 b.29.1.7 66182 d.166.1.1 66183 f.1.5.1 66184 2kdgA 100 3.46e+01 1pvc1 301 3.47e+01 1pov1 1kjlA 146 3.51e+01 b.29.1.3 118689 1yewA 382 3.52e+01 2nn8A 138 3.55e+01 b.29.1.3 138392 2okxA 956 3.62e+01 1h30A 422 3.67e+01 b.29.1.4 76604 b.29.1.4 76605 2wo1A 185 3.71e+01 3hn3A 613 3.98e+01 3keyA 185 4.00e+01