# List of top-scoring protein chains for T0517.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2qs7A 144 3.21e-18 1l1sA 113 2.41e-03 c.114.1.1 73484 1jx7A 117 2.99e-03 c.114.1.1 77195 2pd2A 108 8.67e-03 2hy5B 136 2.87e-01 c.114.1.1 136866 3iygE 515 6.25e-01 2id2A 475 2.17e+00 1euhA 475 2.39e+00 1euhA c.82.1.1 35369 1qi1A 475 2.45e+00 1euhA c.82.1.1 35381 1g5tA 196 2.90e+00 1g5rA c.37.1.11 32366 1jqnA 883 3.58e+00 c.1.12.3 77159 2qe0A 475 3.90e+00 1xq9A 258 4.59e+00 c.60.1.1 115835 3kkkA 258 4.62e+00 2qu7A 288 5.14e+00 1vd6A 224 5.62e+00 c.1.18.3 119991 3eb5A 74 6.33e+00 2pfmA 444 9.23e+00 1nmmB 286 9.88e+00 c.68.1.2 80662 3d3aA 612 9.95e+00 1qmyA 167 1.04e+01 1qmyA d.3.1.2 37094 2fydB 286 1.06e+01 c.68.1.2 134366 1yroB 286 1.10e+01 c.68.1.2 123932 2ogjA 417 1.19e+01 1uulA 202 1.23e+01 c.47.1.10 113433 2jqgR 167 1.28e+01 d.3.1.2 148176 1qolA 173 1.35e+01 1qmyA d.3.1.2 37097 1rvkA 382 1.37e+01 c.1.11.2,d.54.1.1 97928,97929 2hy5C 102 1.41e+01 c.114.1.2 136867 2a5yB 549 1.47e+01 a.4.5.80,a.77.1.3,c.37.1.20 144786,144787,144788 2pmwB 540 1.51e+01 3bpsA 540 1.52e+01 2qtwB 546 1.52e+01 1nw8A 319 1.54e+01 c.66.1.11 86292 2e2zA 100 1.66e+01 1pztA 286 1.80e+01 c.68.1.2 95470 2p4eA 692 1.89e+01 3kcqA 215 1.96e+01 2dnlA 114 2.28e+01 2ywrA 216 2.30e+01 1c7iA 489 2.31e+01 1thg c.69.1.1 34632 1g0cA 364 2.43e+01 7a3hA c.1.8.3 60165 2pz0A 252 2.66e+01 2okgA 255 2.67e+01 c.124.1.8 148805 1tk1A 260 2.70e+01 d.248.1.1 107066 1fp0A 88 2.79e+01 1fp0A g.50.1.2 45361 1wyrA 121 2.80e+01 3ba1A 333 2.81e+01 2vl3A 172 2.86e+01 c.47.1.10 153251 3e1iA 87 2.90e+01 1n8eA 89 2.97e+01 h.1.8.1 80287 1hd2A 161 3.01e+01 c.47.1.10 60962 1sl4A 155 3.04e+01 d.169.1.1 105710 1k9iA 156 3.05e+01 d.169.1.1 68343 3bboX 198 3.11e+01 i.1.1.1 155090 1m6jA 261 3.16e+01 c.1.1.1 78693 3ks6A 250 3.17e+01 1fr8A 288 3.27e+01 1fgxA c.68.1.2 34510 1fgxA 288 3.28e+01 1fgxA c.68.1.2 34508 1nf5B 286 3.28e+01 c.68.1.2 80454 2b6bD 175 3.28e+01 d.169.1.1 127982 1tklA 326 3.56e+01 d.248.1.1 107105 1txnA 328 3.57e+01 d.248.1.1 112779 2nz0A 180 3.59e+01 2jr7A 89 3.60e+01 1s6cA 183 3.64e+01 a.39.1.5 98594 2vg1A 228 3.65e+01 2el4A 46 3.66e+01 k.12.1.1 146885 2vg0A 227 3.69e+01 3gbxA 420 3.85e+01 1amoA 615 3.88e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 25669,31210,31557 2es6A 101 4.02e+01 1urmA 172 4.05e+01 c.47.1.10 113413 2d86A 143 4.07e+01 2chyA 128 4.12e+01 c.23.1.1 31081 3es9A 618 4.16e+01 1ja0A 620 4.17e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62798,62799,62800 2i2rE 180 4.19e+01 1j9zA 622 4.20e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62792,62793,62794 2fy7A 287 4.24e+01 2icaA 183 4.28e+01 c.62.1.1 137236 2hy5A 130 4.41e+01 c.114.1.1 136865 1z41A 338 4.56e+01 c.1.4.1 124421 1jnrA 643 4.66e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 2fjbA 643 4.69e+01 2oyhA 66 4.77e+01 h.1.8.1 139433 3c8oA 162 4.88e+01 1eg2A 319 4.94e+01 1eg2A c.66.1.11 34249 3bvhA 62 5.00e+01 1auzA 116 5.09e+01 c.13.2.1 30883 1s1eA 224 5.12e+01 a.39.1.5 112007 3c3bA 420 5.20e+01 2rfjA 119 5.20e+01 1u69A 163 5.25e+01 d.32.1.7 107699 2fe9A 86 5.43e+01 2fycB 286 5.45e+01 c.68.1.2 134362 1ob8A 135 5.47e+01 c.52.1.18 111627 2ooeA 530 5.47e+01 a.118.8.7 148923 2fb6A 117 5.48e+01 1xuoA 188 5.55e+01 c.62.1.1 122336 2qtsA 438 5.58e+01 1j2zA 270 5.59e+01 b.81.1.1 90805 3hgcA 465 5.65e+01 2d3dA 88 5.70e+01 3draB 390 5.86e+01 2b6gA 119 5.90e+01 2pwjA 171 5.91e+01 1assA 159 6.03e+01 c.8.5.2 30818 3h42B 540 6.05e+01 2d1pB 119 6.08e+01 c.114.1.1 131137 1dfoA 417 6.09e+01 1bj4A c.67.1.4 34480 1eqbA 417 6.09e+01 1bj4A c.67.1.4 34484 1ldfA 281 6.11e+01 f.19.1.1 73845 3c6qA 311 6.12e+01 1fx8A 281 6.19e+01 f.19.1.1 43651 3g8mA 417 6.23e+01 1evyA 366 6.29e+01 1evyA a.100.1.6,c.2.1.6 18811,30215 1wgeA 83 6.36e+01 g.41.17.1 120972 3adkA 195 6.40e+01 c.37.1.1 31885 1rd4A 191 6.43e+01 c.62.1.1 97304 3dnzA 316 6.48e+01 3h32A 197 6.52e+01 8tlnE 316 6.58e+01 1hyt d.92.1.2 59075 1f0xA 571 6.68e+01 1f0xA d.58.32.2,d.145.1.1 39483,41746 2h01A 192 6.73e+01 c.47.1.10 135928 1qorA 327 6.78e+01 1qorA b.35.1.2,c.2.1.1 24766,29782 1wjtA 103 6.89e+01 a.48.3.1 114711 2x2nA 475 7.11e+01 1l5xA 280 7.19e+01 c.106.1.1 77718 2cxjA 98 7.35e+01 2vh3B 113 7.42e+01 1lfaA 187 7.45e+01 1ido c.62.1.1 34122 2vh3A 113 7.55e+01 1pdoA 135 7.56e+01 c.54.1.1 33376 1vsqA 133 7.60e+01 c.54.1.1 145802 1vrcA 136 7.61e+01 c.54.1.1 120454 2jznA 133 7.65e+01 3bqxA 150 7.67e+01 1mi3A 322 7.70e+01 c.1.7.1 91274 1ye6A 322 7.78e+01 3jz4A 481 7.81e+01 1sm9A 322 7.82e+01 c.1.7.1 112100 1r38A 322 7.84e+01 c.1.7.1 111676 1z9aA 321 7.99e+01