# List of top-scoring protein chains for T0517.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2qs7A 144 4.73e-20 1jx7A 117 2.83e-06 c.114.1.1 77195 1l1sA 113 1.52e-04 c.114.1.1 73484 2pd2A 108 6.30e-04 2hy5B 136 4.51e-02 c.114.1.1 136866 3iygE 515 2.79e-01 2hy5A 130 1.09e+00 c.114.1.1 136865 2hy5C 102 1.22e+00 c.114.1.2 136867 2ogjA 417 1.38e+00 1ob8A 135 2.29e+00 c.52.1.18 111627 2fb6A 117 2.41e+00 2d1pB 119 2.91e+00 c.114.1.1 131137 1g5tA 196 3.97e+00 1g5rA c.37.1.11 32366 1amoA 615 6.66e+00 1amoA b.43.4.1,c.23.5.2,c.25.1.4 25669,31210,31557 3es9A 618 6.97e+00 1ja0A 620 7.12e+00 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62798,62799,62800 1j9zA 622 7.16e+00 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62792,62793,62794 1hh1A 143 9.17e+00 1gefA c.52.1.18 61036 3d3aA 612 9.80e+00 2pfmA 444 9.86e+00 1z41A 338 1.08e+01 c.1.4.1 124421 1auzA 116 1.14e+01 c.13.2.1 30883 1hd2A 161 1.16e+01 c.47.1.10 60962 1uulA 202 1.17e+01 c.47.1.10 113433 2vl3A 172 1.22e+01 c.47.1.10 153251 3eb5A 74 1.26e+01 2dnlA 114 1.30e+01 2hi0A 240 1.35e+01 3fm3A 358 1.37e+01 1urmA 172 1.40e+01 c.47.1.10 113413 2d3dA 88 1.43e+01 2fe9A 86 1.44e+01 2b6gA 119 1.47e+01 1tk9A 188 1.54e+01 c.80.1.3 107082 2es6A 101 1.66e+01 2chyA 128 1.68e+01 c.23.1.1 31081 3fgnA 251 1.69e+01 1jqnA 883 1.70e+01 c.1.12.3 77159 1w0mA 226 1.94e+01 c.1.1.1 109027 2e2zA 100 2.02e+01 2vg1A 228 2.07e+01 1vd6A 224 2.11e+01 c.1.18.3 119991 2rd5A 298 2.13e+01 2pz0A 252 2.13e+01 2vg0A 227 2.16e+01 3devA 320 2.45e+01 1znwA 207 2.45e+01 c.37.1.1 125412 2opiA 212 2.49e+01 1s4qA 228 2.58e+01 c.37.1.1 98507 3h5iA 140 2.59e+01 1evyA 366 2.68e+01 1evyA a.100.1.6,c.2.1.6 18811,30215 2el4A 46 2.74e+01 k.12.1.1 146885 1qmyA 167 2.77e+01 1qmyA d.3.1.2 37094 2pmwB 540 2.89e+01 3bpsA 540 2.89e+01 2qtwB 546 2.91e+01 1njgA 250 2.91e+01 c.37.1.20 85785 1z8fA 228 2.92e+01 1m6jA 261 2.96e+01 c.1.1.1 78693 1gd5A 130 3.21e+01 1gd5A d.189.1.1 60439 3m46A 666 3.28e+01 3ffjA 666 3.28e+01 3glfB 395 3.29e+01 3glgB 395 3.32e+01 3flaA 267 3.41e+01 3kcqA 215 3.44e+01 1ihuA 589 3.46e+01 c.37.1.10,c.37.1.10 62394,62395 1ahsA 126 3.51e+01 1ahsA b.19.1.1 23794 2p4eA 692 3.65e+01 1kq6A 141 3.67e+01 d.189.1.1 91020 2j13A 247 3.75e+01 c.6.2.3 137934 1xxiB 368 3.79e+01 a.80.1.1,c.37.1.20 116185,116186 1assA 159 3.81e+01 c.8.5.2 30818 3glhB 376 3.85e+01 1jr3A 373 3.85e+01 a.80.1.1,c.37.1.20 63245,63246 1g0cA 364 4.39e+01 7a3hA c.1.8.3 60165 1nw8A 319 4.47e+01 c.66.1.11 86292 1nnlA 225 4.66e+01 c.108.1.4 85906 3fbgA 346 4.71e+01 3iplA 501 4.71e+01 1wyrA 121 4.76e+01 1l8lA 225 4.83e+01 c.108.1.4 84562 1viwA 471 4.95e+01 1smd b.71.1.1,c.1.8.1 27776,28763 3d00A 191 5.07e+01 1g2iA 166 5.16e+01 1g2iA c.23.16.2 31438 1jd9A 453 5.24e+01 b.71.1.1,c.1.8.1 77106,77107 1jd7A 453 5.25e+01 b.71.1.1,c.1.8.1 77104,77105 1kxhA 448 5.31e+01 b.71.1.1,c.1.8.1 73151,73152 2i2xB 258 5.31e+01 1ulsA 245 5.32e+01 c.2.1.2 113284 1g94A 448 5.33e+01 b.71.1.1,c.1.8.1 65169,65170 1oseA 496 5.33e+01 b.71.1.1,c.1.8.1 27766,28753 1aqmA 453 5.34e+01 b.71.1.1,c.1.8.1 27717,28704 3e59A 330 5.35e+01 1kxqA 496 5.36e+01 b.71.1.1,c.1.8.1 73163,73164 1vahA 496 5.36e+01 b.71.1.1,c.1.8.1 119905,119906 1hx0A 496 5.36e+01 b.71.1.1,c.1.8.1 61346,61347 1tk1A 260 5.37e+01 d.248.1.1 107066 2h6rA 219 5.48e+01 3fjoA 637 5.49e+01 1qolA 173 5.78e+01 1qmyA d.3.1.2 37097 2eq5A 228 5.80e+01 1akwA 147 5.81e+01 c.23.5.1 31153 3hzjA 310 5.90e+01 1ddgA 374 5.92e+01 1amoA b.43.4.1,c.25.1.4 25671,31559 2bw2A 140 5.95e+01 2jqgR 167 5.96e+01 d.3.1.2 148176 1pigA 496 6.09e+01 b.71.1.1,c.1.8.1 27764,28751 2a5jA 191 6.11e+01 c.37.1.8 126175 1dhkA 496 6.19e+01 1smd b.71.1.1,c.1.8.1 27761,28748 1tklA 326 6.20e+01 d.248.1.1 107105 1txnA 328 6.21e+01 d.248.1.1 112779 1ppiA 496 6.22e+01 b.71.1.1,c.1.8.1 27763,28750 1jfhA 496 6.24e+01 b.71.1.1,c.1.8.1 27762,28749 1bvnP 496 6.25e+01 1smd b.71.1.1,c.1.8.1 27767,28754 3ilvA 634 6.28e+01 3dhpA 496 6.35e+01 b.71.1.1,c.1.8.1 157725,157726 1fx1A 148 6.41e+01 c.23.5.1 31169 1z56C 264 6.47e+01 1pv8A 330 6.50e+01 c.1.10.3 95155 1vr9A 213 6.62e+01 d.37.1.1 144433 1e51A 330 6.66e+01 1b4kA c.1.10.3 59254 3flbA 267 6.67e+01 2depA 356 6.70e+01 1q4nX 496 6.81e+01 b.71.1.1,c.1.8.1 95807,95808 1py2A 132 6.82e+01 a.26.1.2 95319 1m48A 133 6.84e+01 a.26.1.2 74443 1jaeA 471 6.85e+01 b.71.1.1,c.1.8.1 27773,28760 3blpX 496 6.86e+01 3inkC 133 6.86e+01 3inkC a.26.1.2 16881 2f5xA 312 6.88e+01 1smdA 496 6.90e+01 b.71.1.1,c.1.8.1 27768,28755 1z32X 496 6.90e+01 b.71.1.1,c.1.8.1 124394,124395 3blkA 496 6.90e+01 1kbbA 496 6.98e+01 b.71.1.1,c.1.8.1 72275,72276 1ir6A 424 7.00e+01 c.107.1.2 71342 1jxkA 491 7.01e+01 b.71.1.1,c.1.8.1 63316,63317 1kbkA 496 7.03e+01 b.71.1.1,c.1.8.1 72282,72283 1kguA 496 7.06e+01 b.71.1.1,c.1.8.1 68598,68599 2ywrA 216 7.10e+01 1kgwA 496 7.13e+01 b.71.1.1,c.1.8.1 68600,68601 3baxA 496 7.13e+01 b.71.1.1,c.1.8.1 155041,155042 3ij8A 496 7.16e+01 1kgxA 496 7.16e+01 b.71.1.1,c.1.8.1 68602,68603 2cpuA 496 7.17e+01 1smd b.71.1.1,c.1.8.1 63334,63335 2gwgA 350 7.19e+01 c.1.9.15 135805 1ijyA 130 7.23e+01 1ijxA a.141.1.1 62517 1m4aA 133 7.23e+01 a.26.1.2 74447 1kb3A 496 7.31e+01 b.71.1.1,c.1.8.1 72269,72270 2pwjA 171 7.34e+01 2obbA 142 7.52e+01 c.108.1.25 148715 2drpA 66 7.65e+01 2drpA g.37.1.1,g.37.1.1 45026,45027 1jxjA 496 7.79e+01 b.71.1.1,c.1.8.1 63314,63315 3e56A 113 7.89e+01 2d37A 176 7.91e+01 1azlA 147 7.96e+01 c.23.5.1 31154 3m0fA 213 7.98e+01