Best Alignments for TR488

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1g9oA	9.4125e-14	1g9oA/TR488-1g9oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
1tp5A	9.9927e-14	1tp5A/TR488-1tp5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
2he2A	1.2249e-13	2he2A/TR488-2he2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ozfA	2.0916e-13	2ozfA/TR488-2ozfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2qt5A	2.4457e-13	2qt5A/TR488-2qt5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2h2bA	3.5373e-13	2h2bA/TR488-2h2bA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2qg1A	4.9027e-13	2qg1A/TR488-2qg1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2opgA	5.6663e-13	2opgA/TR488-2opgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2fe5A	6.3710e-13	2fe5A/TR488-2fe5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
2h3lA	6.8397e-13	2h3lA/TR488-2h3lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
1n7eA	6.9452e-13	1n7eA/TR488-1n7eA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
2he4A	7.1940e-13	2he4A/TR488-2he4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2i1nA	8.0873e-13	2i1nA/TR488-2i1nA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2awxA	1.0405e-12	2awxA/TR488-2awxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wf7A	1.2386e-12	1wf7A/TR488-1wf7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
1qavA	1.3602e-12	1qavA/TR488-1qavA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
2iwnA	1.5542e-12	2iwnA/TR488-2iwnA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1kwaA	1.6018e-12	1kwaA/TR488-1kwaA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
2jikA	1.7282e-12	2jikA/TR488-2jikA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1qauA	1.7969e-12	1qauA/TR488-1qauA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001