Best Alignments for TR488

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2h3lA	2.7798e-15	2h3lA/TR488-2h3lA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
2qt5A	2.9477e-15	2qt5A/TR488-2qt5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1mfgA	3.1343e-15	1mfgA/TR488-1mfgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
1g9oA	5.9535e-15	1g9oA/TR488-1g9oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
2opgA	6.4782e-15	2opgA/TR488-2opgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1pdr	6.8560e-15	1pdr/TR488-1pdr-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wf7A	7.5908e-15	1wf7A/TR488-1wf7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
2fe5A	8.8498e-15	2fe5A/TR488-2fe5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
1tp5A	8.9830e-15	1tp5A/TR488-1tp5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
1n7eA	1.2132e-14	1n7eA/TR488-1n7eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
2he2A	1.2282e-14	2he2A/TR488-2he2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2awxA	2.1083e-14	2awxA/TR488-2awxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2h2bA	2.8127e-14	2h2bA/TR488-2h2bA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1kwaA	2.8858e-14	1kwaA/TR488-1kwaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
2jikA	3.1426e-14	2jikA/TR488-2jikA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1qavA	3.4579e-14	1qavA/TR488-1qavA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.36.1.1
2i1nA	4.3870e-14	2i1nA/TR488-2i1nA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2jilA	4.6950e-14	2jilA/TR488-2jilA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2iwnA	5.1427e-14	2iwnA/TR488-2iwnA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2vphA	6.0583e-14	2vphA/TR488-2vphA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001