# List of top-scoring protein chains for TR488.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rgrA 99 1.01e-07 b.36.1.1 104931 2dm8A 116 1.14e-07 1kefA 93 1.24e-07 b.36.1.1 72369 2i1nA 102 1.46e-07 2enoA 120 1.48e-07 2opgA 98 1.60e-07 1iu0A 91 1.64e-07 b.36.1.1 83707 1zokA 93 1.68e-07 b.36.1.1 125451 2jikA 101 1.69e-07 2jinA 102 1.75e-07 2he2A 102 1.95e-07 2bygA 117 2.03e-07 b.36.1.1 129480 1um7A 113 2.70e-07 b.36.1.1 99579 1d5gA 96 2.77e-07 b.36.1.1 70080 2fneA 117 2.89e-07 b.36.1.1 133813 2fe5A 94 2.92e-07 b.36.1.1 133323 1vj6A 102 3.14e-07 b.36.1.1 120064 1gm1A 94 3.16e-07 b.36.1.1 70271 2awxA 105 4.09e-07 2dkrA 93 4.52e-07 1whaA 105 4.80e-07 b.36.1.1 114638 2g2lA 105 5.57e-07 2awwA 105 5.99e-07 2oqsA 97 6.08e-07 2awuA 105 6.15e-07 2qg1A 92 7.41e-07 2iwqA 123 7.45e-07 2dazA 124 7.63e-07 2fcfA 103 7.66e-07 b.36.1.1 133267 1qlcA 95 7.72e-07 b.36.1.1 24776 2jreA 108 8.73e-07 1uhpA 107 9.17e-07 b.36.1.1 99400 1tp5A 119 9.54e-07 b.36.1.1 119305 1q7xA 108 1.03e-06 b.36.1.1 96059 1be9A 119 1.07e-06 b.36.1.1 24774 2dluA 111 1.11e-06 1wf8A 107 1.11e-06 b.36.1.1 120967 1pdrA 99 1.15e-06 b.36.1.1 24771 2r4hA 112 1.19e-06 1oziA 99 1.21e-06 b.36.1.1 93845 2g5mB 113 1.32e-06 2fn5A 94 1.56e-06 2o2tA 117 1.59e-06 2qt5A 200 1.69e-06 2jilA 97 1.71e-06 2i0lA 84 1.89e-06 2iwnA 97 1.94e-06 2ogpA 97 2.06e-06 1x5qA 110 2.06e-06 b.36.1.1 121717 1uewA 114 2.14e-06 b.36.1.1 99281 2djtA 104 2.16e-06 2i0iA 85 2.22e-06 b.36.1.1 136953 2dc2A 103 2.24e-06 1um1A 110 2.26e-06 b.36.1.1 99578 2dmzA 129 3.22e-06 1wfvA 103 3.44e-06 b.36.1.1 114594 1z87A 263 4.63e-06 2iwoA 120 4.82e-06 1gq5A 91 4.93e-06 b.36.1.1 76274 1i92A 91 4.97e-06 b.36.1.1 61990 1gq4A 90 5.10e-06 b.36.1.1 70340 1g9oA 91 5.14e-06 b.36.1.1 60400 1ujuA 111 5.43e-06 b.36.1.1 99469 1z86A 87 6.28e-06 b.36.1.1 124690 1n7eA 97 6.34e-06 b.36.1.1 91691 1qavA 90 6.40e-06 b.36.1.1 24777 2pdzA 86 6.74e-06 b.36.1.1 24778 1t2mA 101 6.78e-06 b.36.1.1 119133 2ocsA 88 6.87e-06 2ainA 93 7.41e-06 1xz9A 101 7.48e-06 b.36.1.1 122471 1uezA 101 7.61e-06 b.36.1.1 99286 2ehrA 117 7.80e-06 2vrfA 95 8.43e-06 2q9vA 90 8.48e-06 1ueqA 123 8.94e-06 b.36.1.1 99271 2he4A 90 8.99e-06 1x6dA 119 9.23e-06 b.36.1.2 121739 1ihjA 98 9.91e-06 b.36.1.1 62382 2csjA 117 1.03e-05 b.36.1.1 130771 2db5A 128 1.10e-05 1i16A 130 1.37e-05 b.36.1.2 24787 1wh1A 124 1.39e-05 b.36.1.1 114629 2d90A 102 1.46e-05 2f0aA 98 1.57e-05 b.36.1.1 132661 1l6oA 95 1.58e-05 b.36.1.1 84534 1uf1A 128 1.66e-05 b.36.1.1 99288 3b76A 118 1.76e-05 2reyA 100 1.80e-05 2ozfA 92 2.09e-05 2pktA 91 2.11e-05 1mc7A 95 2.14e-05 b.36.1.1 91241 2k1zA 104 2.14e-05 2eejA 96 2.25e-05 2i04A 85 2.83e-05 2d92A 108 3.02e-05 1wg6A 127 3.22e-05 b.36.1.1 114603 1wi4A 109 3.35e-05 b.36.1.1 120973 2h2cA 107 3.60e-05 2h2bA 107 3.62e-05 1mfgA 95 3.71e-05 b.36.1.1 79043 2h3lA 103 3.89e-05 b.36.1.1 136046 2h3mA 97 4.16e-05 2v1wA 90 4.38e-05 1qauA 112 4.58e-05 b.36.1.1 24779 1uepA 103 4.58e-05 b.36.1.1 99270 1qavB 115 4.59e-05 b.36.1.1 24780 1b8qA 127 4.89e-05 b.36.1.1 24781 1q3oA 109 5.05e-05 b.36.1.1 95700 2v90A 96 5.05e-05 1wi2A 104 5.47e-05 b.36.1.1 114659 1vb7A 94 5.51e-05 b.36.1.1 108474 1v62A 117 5.54e-05 b.36.1.1 108390 2qbwA 195 5.68e-05 2eeiA 106 5.86e-05 1kwaA 88 6.47e-05 b.36.1.1 24772 1x8sA 102 6.79e-05 b.36.1.1 114967 1ry4A 128 6.97e-05 b.36.1.1 98085 1rzxA 98 7.09e-05 b.36.1.1 98236 1x5rA 112 7.44e-05 b.36.1.1 121718 2eegA 94 7.55e-05 2pa1A 87 7.70e-05 1p1dA 196 7.80e-05 b.36.1.1,b.36.1.1 93896,93897 2z17A 104 9.50e-05 2edzA 114 9.55e-05 1v5lA 103 0.000100 b.36.1.1 108378 1va8A 113 0.000103 b.36.1.1 119903 1x5nA 114 0.000108 b.36.1.1 121714 2omjA 89 0.000117 1uitA 117 0.000120 b.36.1.1 99433 1ujdA 117 0.000124 b.36.1.1 99454 1m5zA 91 0.000126 b.36.1.1 78676 1v5qA 122 0.000129 b.36.1.1 108383 2uzcA 88 0.000129 1p1eA 101 0.000135 b.36.1.1 93898 1x45A 98 0.000136 b.36.1.1 121679 1u37A 89 0.000145 b.36.1.1 119501 2q3gA 89 0.000145 1nf3C 128 0.000147 b.36.1.1 85596 2cssA 121 0.000148 b.36.1.1 130780 2yuyA 126 0.000149 2osgA 83 0.000149 1wf7A 103 0.000150 b.36.1.1 114577 1u3bA 185 0.000151 b.36.1.1,b.36.1.1 119508,119509 2jweA 88 0.000151 2dlsA 93 0.000151 2ev8A 97 0.000152 2rczA 81 0.000156 2pkuA 87 0.000160 2gzvA 114 0.000170 2ejyA 97 0.000173 1zubA 114 0.000196 b.36.1.1 125665 2eehA 100 0.000214 1rgwA 85 0.000216 b.36.1.1 97455 1wjlA 90 0.000219 b.36.1.1 114701 2f5yA 91 0.000252 b.36.1.1 133015 1whdA 100 0.000283 b.36.1.1 114641 2edpA 100 0.000284 1v6bA 118 0.000320 b.36.1.1 108394 2yt7A 101 0.000387 1wfgA 131 0.000402 b.36.1.1 114581 2pntA 98 0.000420 2egkA 101 0.000448 2egoA 96 0.000508 3bpuA 88 0.000663 1w9eA 166 0.000678 b.36.1.1,b.36.1.1 120779,120780 2vphA 100 0.000758 2qktA 90 0.000763 2edvA 96 0.000771 1ujvA 96 0.000816 b.36.1.1 99470 2cs5A 119 0.000917 b.36.1.1 130747 2e7kA 91 0.001070 1ufxA 103 0.001214 b.36.1.1 99359 2qkvA 96 0.001257 1y7nA 90 0.001380 b.36.1.1 122700 1u39A 80 0.001458 b.36.1.1 119503 1wifA 126 0.001458 b.36.1.1 114669 2yt8A 94 0.001830 2eaqA 90 0.001967 2yubA 118 0.01331 2d8iA 114 0.01850 1vaeA 111 0.01874 b.36.1.1 108466 2joaA 105 0.01952 2ytwA 118 0.02027 1r6jA 82 0.02853 b.36.1.1 97151 2p3wA 112 0.02958 1obxA 79 0.03854 b.36.1.1 86783 2pzdA 113 0.06608 1fc6A 388 0.08695 b.36.1.3,c.14.1.2 64738,64739 1fc9A 388 0.1126 b.36.1.3,c.14.1.2 64742,64743 2vsvA 109 0.2256 1lcyA 325 0.5214 b.36.1.4,b.47.1.1 73834,73835 3cs0A 448 0.7649 1ky9A 448 0.8154 b.36.1.4,b.47.1.1 73198,73199 2hgaA 125 1.906 1sotA 320 2.355 b.36.1.4,b.47.1.1 105852,105853 1te0A 318 2.361 b.36.1.4,b.47.1.1 112400,112401 1sozA 314 2.372 b.36.1.4,b.47.1.1 105859,105860 2zmvA 227 32.31 2j3tD 219 32.65 2jsnA 96 34.28 2dy0A 190 39.47 2ps1A 226 44.75 2i6vA 87 45.39 2i4sA 105 47.41 1m54A 363 59.84 c.79.1.1 74463 1jbqA 435 63.16 c.79.1.1 62850 2bh4X 134 80.86 2bgvX 134 87.23 2bonA 332 89.21