# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2opgA	98	9.87e-17		
2i1nA	102	2.79e-16		
2awxA	105	4.34e-16		
1tp5A	119	5.03e-16	b.36.1.1	119305
2iwnA	97	5.08e-16		
1x45A	98	5.34e-16	b.36.1.1	121679
2jikA	101	7.47e-16		
2he2A	102	8.33e-16		
2fe5A	94	8.38e-16	b.36.1.1	133323
2jilA	97	1.16e-15		
2f0aA	98	1.22e-15	b.36.1.1	132661
2i04A	85	1.30e-15		
2fneA	117	1.44e-15	b.36.1.1	133813
1pdr	99	1.60e-15		
2qg1A	92	2.16e-15		
1n7eA	97	2.24e-15	b.36.1.1	91691
2q9vA	90	2.30e-15		
1kwaA	88	2.86e-15	b.36.1.1	24772
2gzvA	114	3.87e-15		
2qt5A	200	4.16e-15		
1g9oA	91	4.34e-15	b.36.1.1	60400
1qauA	112	4.68e-15	b.36.1.1	24779
2egoA	96	5.15e-15		
1nf3C	128	6.22e-15	b.36.1.1	85596
2iwoA	120	6.53e-15		
2h2bA	107	7.81e-15		
1ihjA	98	8.61e-15	b.36.1.1	62382
2ozfA	92	1.13e-14		
2uzcA	88	1.42e-14		
1qavA	90	1.86e-14	b.36.1.1	24777
2h3lA	103	2.02e-14	b.36.1.1	136046
2pktA	91	2.07e-14		
2pa1A	87	2.89e-14		
1wf7A	103	3.42e-14	b.36.1.1	114577
1be9A	119	3.51e-14	b.36.1.1	24774
2eaqA	90	4.43e-14		
1q3oA	109	5.45e-14	b.36.1.1	95700
2q3gA	89	8.97e-14		
1mfgA	95	1.17e-13	b.36.1.1	79043
2he4A	90	1.44e-13		
1v5lA	103	1.47e-13	b.36.1.1	108378
2vphA	100	1.58e-13		
2ocsA	88	2.03e-13		
1m5zA	91	2.96e-13	b.36.1.1	78676
2qkvA	96	5.42e-13		
1l6oA	95	6.10e-13	b.36.1.1	84534
1i92A	91	9.28e-13	b.36.1.1	61990
2fcfA	103	1.11e-12	b.36.1.1	133267
1qavB	115	1.15e-12	b.36.1.1	24780
2rczA	81	1.47e-12		
2reyA	100	2.28e-12		
2f5yA	91	3.18e-12	b.36.1.1	133015
1b8qA	127	3.52e-12	b.36.1.1	24781
1fc6A	388	5.10e-12	b.36.1.3,c.14.1.2	64738,64739
1r6jA	82	6.84e-12	b.36.1.1	97151
3bpuA	88	7.23e-11		
1ky9A	448	2.48e-08	b.36.1.4,b.47.1.1	73198,73199
2p3wA	112	1.53e-06		
2z9iA	324	7.68e-06		
1lcyA	325	1.08e-05	b.36.1.4,b.47.1.1	73834,73835
2adzA	178	1.21e-05	b.55.1.1	126599
2i6vA	87	1.60e-05		
1y8tA	324	1.67e-05	b.36.1.4,b.47.1.1	122763,122764
1te0A	318	1.74e-05	b.36.1.4,b.47.1.1	112400,112401
1sotA	320	0.000116	b.36.1.4,b.47.1.1	105852,105853
1n6eA	1071	0.01897	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	80149,80150,80151,80152
1k32A	1045	0.05101	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.3363	c.14.1.2	66425
1lh0A	213	0.4349	c.61.1.1	73896
2ps1A	226	0.5858		
1oroA	213	0.8296	c.61.1.1	34093
2p1zA	180	1.387		
1y0bA	197	1.600	c.61.1.1	122476
2yzkA	178	1.776		
1opr	213	2.438		
2q07A	306	3.217		
1ao0A	459	6.188	c.61.1.1,d.153.1.1	34049,41816
1dekA	241	8.510	c.37.1.1	31842
1ecfA	504	10.11	c.61.1.1,d.153.1.1	34053,41820
1vchA	175	10.11	c.61.1.1	119980
1l1qA	186	13.51	c.61.1.1	77653
2aeeA	211	14.28	c.61.1.1	126620
2dy0A	190	17.08		
2guiA	194	17.85	c.55.3.5	135737
2jsnA	96	18.60		
1z7yA	322	18.65	c.79.1.1	124679
1ta9A	450	20.11		
1q33A	292	20.52	d.113.1.1	95657
2plcA	274	21.78	c.1.18.2	29614
1xm7A	195	26.01	d.159.1.8	115473
2igbA	179	28.46		
1g0rA	293	30.68	c.68.1.6	34532
1g2qA	187	31.12	c.61.1.1	65117
2d9iA	96	31.36		
3cu5A	141	31.43		
1p16A	395	33.34	b.40.4.6,d.142.2.3	87661,87662
1j54A	186	40.24	c.55.3.5	77077
1zn8A	180	41.84	c.61.1.1	125376
1wd5A	208	46.03	c.61.1.1	114524
1xhfA	123	47.06	c.23.1.1	122003
1j53A	186	49.11	c.55.3.5	77076
1pt6A	213	50.20	c.62.1.1	95091
1h95A	79	56.29	b.40.4.5	65742
1s8nA	205	56.34	c.23.1.1	105374
2zmvA	227	57.62		
3c3mA	138	58.52		
2g8oA	264	60.11	d.117.1.1	134779
2g8mA	264	60.44		
1eudA	311	62.14	c.2.1.8,c.23.4.1	30312,31140
1zgzA	122	63.25	c.23.1.1	125065
1dy2A	180	66.88	d.169.1.5	42451
1k8qA	377	66.99	c.69.1.6	72177
3dahA	319	68.81		
2a9oA	120	73.63	c.23.1.1	126444
3bs5B	80	73.99		
1l2tA	235	75.40	c.37.1.12	73514
1yn9A	169	77.40		
1u0sY	118	78.31	c.23.1.1	107566
1djqA	729	78.64	c.1.4.1,c.3.1.1,c.4.1.1	28614,30315,30600
1e2xA	243	80.82	a.4.5.6,a.78.1.1	16113,18443
2gj2A	85	81.80		
1kgsA	225	83.26	a.4.6.1,c.23.1.1	68596,68597
1ypvA	313	84.13		
3ce9A	354	84.38		
1gph1	465	85.12		
1u9yA	284	86.23	c.61.1.2,c.61.1.2	119655,119656
1ckmA	330	86.45	b.40.4.6,d.142.2.3	25358,41585
1hlgA	371	86.61	c.69.1.6	34656
2ek5A	129	86.98		
2ebuA	112	88.72		
1vs0A	310	89.30