# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2opgA 98 1.19e-15 2i1nA 102 1.44e-15 1x45A 98 2.43e-15 b.36.1.1 121679 2awxA 105 2.99e-15 2iwnA 97 3.64e-15 2fe5A 94 3.70e-15 b.36.1.1 133323 2jikA 101 4.16e-15 2jilA 97 4.62e-15 2fneA 117 6.24e-15 b.36.1.1 133813 1tp5A 119 7.37e-15 b.36.1.1 119305 2he2A 102 7.60e-15 2f0aA 98 1.03e-14 b.36.1.1 132661 2i04A 85 1.05e-14 2gzvA 114 1.17e-14 1n7eA 97 1.26e-14 b.36.1.1 91691 2q9vA 90 1.40e-14 1kwaA 88 1.46e-14 b.36.1.1 24772 1pdr 99 1.50e-14 2qg1A 92 1.60e-14 2qt5A 200 2.36e-14 1qauA 112 2.51e-14 b.36.1.1 24779 1g9oA 91 2.79e-14 b.36.1.1 60400 2h2bA 107 3.53e-14 2egoA 96 3.73e-14 2ozfA 92 5.28e-14 1wf7A 103 5.86e-14 b.36.1.1 114577 1nf3C 128 5.86e-14 b.36.1.1 85596 2iwoA 120 6.12e-14 1qavA 90 7.07e-14 b.36.1.1 24777 2h3lA 103 8.57e-14 b.36.1.1 136046 1ihjA 98 9.17e-14 b.36.1.1 62382 2uzcA 88 1.15e-13 2pktA 91 1.27e-13 2pa1A 87 1.83e-13 1q3oA 109 2.85e-13 b.36.1.1 95700 1be9A 119 3.01e-13 b.36.1.1 24774 2eaqA 90 3.79e-13 1mfgA 95 4.25e-13 b.36.1.1 79043 2q3gA 89 5.26e-13 2vphA 100 6.30e-13 2he4A 90 7.55e-13 1m5zA 91 9.30e-13 b.36.1.1 78676 1v5lA 103 9.44e-13 b.36.1.1 108378 2ocsA 88 1.31e-12 2qkvA 96 1.36e-12 2rczA 81 3.35e-12 1l6oA 95 3.58e-12 b.36.1.1 84534 1i92A 91 5.63e-12 b.36.1.1 61990 2fcfA 103 5.93e-12 b.36.1.1 133267 2reyA 100 6.81e-12 1qavB 115 7.75e-12 b.36.1.1 24780 1b8qA 127 8.12e-12 b.36.1.1 24781 1fc6A 388 1.43e-11 b.36.1.3,c.14.1.2 64738,64739 2f5yA 91 2.05e-11 b.36.1.1 133015 1r6jA 82 3.38e-11 b.36.1.1 97151 3bpuA 88 3.45e-10 1ky9A 448 3.86e-08 b.36.1.4,b.47.1.1 73198,73199 2p3wA 112 3.91e-06 1lcyA 325 1.41e-05 b.36.1.4,b.47.1.1 73834,73835 2z9iA 324 1.60e-05 1y8tA 324 2.04e-05 b.36.1.4,b.47.1.1 122763,122764 1te0A 318 2.47e-05 b.36.1.4,b.47.1.1 112400,112401 2adzA 178 3.90e-05 b.55.1.1 126599 2i6vA 87 4.18e-05 1sotA 320 0.000161 b.36.1.4,b.47.1.1 105852,105853 1n6eA 1071 0.03368 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1k32A 1045 0.06574 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2ps1A 226 0.3296 1j7xA 302 0.4648 c.14.1.2 66425 1oroA 213 0.5690 c.61.1.1 34093 1lh0A 213 0.5839 c.61.1.1 73896 2p1zA 180 0.8111 1opr 213 0.9527 1y0bA 197 1.239 c.61.1.1 122476 2yzkA 178 1.893 2q07A 306 2.758 1ao0A 459 5.644 c.61.1.1,d.153.1.1 34049,41816 1ecfA 504 7.288 c.61.1.1,d.153.1.1 34053,41820 1vchA 175 8.264 c.61.1.1 119980 2dy0A 190 8.310 1l1qA 186 9.683 c.61.1.1 77653 1zn8A 180 9.738 c.61.1.1 125376 1wd5A 208 10.27 c.61.1.1 114524 1dekA 241 11.69 c.37.1.1 31842 2igbA 179 15.16 2jsnA 96 16.87 1g2qA 187 20.26 c.61.1.1 65117 2aeeA 211 22.83 c.61.1.1 126620 1ta9A 450 23.88 2guiA 194 25.20 c.55.3.5 135737 1q33A 292 25.75 d.113.1.1 95657 1z7yA 322 28.02 c.79.1.1 124679 1w30A 201 31.75 c.61.1.1 114118 1g0rA 293 32.00 c.68.1.6 34532 1qb7A 236 32.73 c.61.1.1 34087 2d9iA 96 34.88 2jbhA 225 35.16 1ckmA 330 39.60 b.40.4.6,d.142.2.3 25358,41585 2zmvA 227 41.67 1j54A 186 41.81 c.55.3.5 77077 2g8mA 264 43.17 2g8oA 264 43.31 d.117.1.1 134779 1u9yA 284 44.68 c.61.1.2,c.61.1.2 119655,119656 1j53A 186 47.99 c.55.3.5 77076 3cu5A 141 48.50 1h95A 79 48.58 b.40.4.5 65742 1xm7A 195 48.60 d.159.1.8 115473 1vs0A 310 49.81 1a3c 181 50.55 1p16A 395 51.08 b.40.4.6,d.142.2.3 87661,87662 1ypvA 313 53.64 1hlgA 371 56.95 c.69.1.6 34656 1pt6A 213 60.08 c.62.1.1 95091 1o5oA 221 60.10 c.61.1.1 92509 2v40A 459 60.19 1dy2A 180 61.08 d.169.1.5 42451 1hgxA 183 61.57 c.61.1.1 34027 1xhfA 123 65.33 c.23.1.1 122003 2plcA 274 66.74 c.1.18.2 29614 3c3mA 138 68.17 1dkuA 317 68.83 c.61.1.2,c.61.1.2 34118,34119 1yioA 208 69.86 a.4.6.2,c.23.1.1 123326,123327 1k8qA 377 69.89 c.69.1.6 72177 3dahA 319 70.33 1eudA 311 71.33 c.2.1.8,c.23.4.1 30312,31140 1mjcA 69 75.07 b.40.4.5 25319 1zgzA 122 79.92 c.23.1.1 125065 3bs5B 80 80.07 1gph1 465 82.69 1kgsA 225 83.00 a.4.6.1,c.23.1.1 68596,68597 1csp 67 83.24 1mb3A 124 84.63 c.23.1.1 78907 2ebuA 112 85.38 2a9oA 120 85.81 c.23.1.1 126444