# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2opgA 98 2.60e-18 2f0aA 98 7.56e-18 b.36.1.1 132661 2i1nA 102 7.67e-18 2iwnA 97 8.58e-18 1tp5A 119 9.19e-18 b.36.1.1 119305 1x45A 98 1.12e-17 b.36.1.1 121679 2jikA 101 1.27e-17 2he2A 102 1.48e-17 2awxA 105 1.71e-17 2fneA 117 1.78e-17 b.36.1.1 133813 1n7eA 97 2.18e-17 b.36.1.1 91691 2fe5A 94 2.36e-17 b.36.1.1 133323 2jilA 97 2.79e-17 1pdr 99 3.54e-17 2qt5A 200 5.44e-17 2qg1A 92 5.53e-17 2q9vA 90 5.68e-17 1kwaA 88 7.30e-17 b.36.1.1 24772 2gzvA 114 7.52e-17 2i04A 85 7.93e-17 1g9oA 91 1.02e-16 b.36.1.1 60400 1wf7A 103 1.09e-16 b.36.1.1 114577 1qauA 112 1.29e-16 b.36.1.1 24779 2egoA 96 1.50e-16 1nf3C 128 2.02e-16 b.36.1.1 85596 2ozfA 92 2.03e-16 1qavA 90 2.37e-16 b.36.1.1 24777 2h2bA 107 2.38e-16 1ihjA 98 2.64e-16 b.36.1.1 62382 2h3lA 103 4.88e-16 b.36.1.1 136046 2iwoA 120 5.46e-16 1be9A 119 5.66e-16 b.36.1.1 24774 2uzcA 88 6.47e-16 2pktA 91 6.98e-16 2q3gA 89 2.05e-15 2he4A 90 2.14e-15 1v5lA 103 2.50e-15 b.36.1.1 108378 1q3oA 109 2.65e-15 b.36.1.1 95700 2pa1A 87 3.00e-15 1m5zA 91 3.09e-15 b.36.1.1 78676 2vphA 100 4.23e-15 1mfgA 95 6.25e-15 b.36.1.1 79043 1l6oA 95 6.93e-15 b.36.1.1 84534 1i92A 91 1.14e-14 b.36.1.1 61990 2eaqA 90 1.31e-14 2rczA 81 1.67e-14 2ocsA 88 1.84e-14 1b8qA 127 2.38e-14 b.36.1.1 24781 1qavB 115 3.10e-14 b.36.1.1 24780 1fc6A 388 4.58e-14 b.36.1.3,c.14.1.2 64738,64739 2qkvA 96 4.80e-14 2reyA 100 1.02e-13 2fcfA 103 1.18e-13 b.36.1.1 133267 1r6jA 82 3.09e-13 b.36.1.1 97151 2f5yA 91 4.60e-13 b.36.1.1 133015 3bpuA 88 5.14e-12 1ky9A 448 6.93e-10 b.36.1.4,b.47.1.1 73198,73199 2p3wA 112 3.54e-07 2i6vA 87 4.72e-07 1lcyA 325 5.70e-07 b.36.1.4,b.47.1.1 73834,73835 2z9iA 324 8.88e-07 1y8tA 324 4.95e-06 b.36.1.4,b.47.1.1 122763,122764 2adzA 178 5.45e-06 b.55.1.1 126599 1te0A 318 5.94e-06 b.36.1.4,b.47.1.1 112400,112401 1sotA 320 2.30e-05 b.36.1.4,b.47.1.1 105852,105853 1n6eA 1071 0.000801 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1k32A 1045 0.004059 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2ps1A 226 0.1508 2aeeA 211 0.2582 c.61.1.1 126620 1zn8A 180 0.4099 c.61.1.1 125376 1ao0A 459 0.4717 c.61.1.1,d.153.1.1 34049,41816 1j7xA 302 0.5498 c.14.1.2 66425 2yzkA 178 0.6500 2dy0A 190 0.7646 1y0bA 197 0.7981 c.61.1.1 122476 1lh0A 213 0.8303 c.61.1.1 73896 2p1zA 180 0.8829 1oroA 213 1.970 c.61.1.1 34093 1opr 213 2.137 2jsnA 96 2.389 1qb7A 236 4.784 c.61.1.1 34087 2q07A 306 5.393 1ckmA 330 5.606 b.40.4.6,d.142.2.3 25358,41585 1vchA 175 5.799 c.61.1.1 119980 1ecfA 504 6.072 c.61.1.1,d.153.1.1 34053,41820 1p16A 395 7.223 b.40.4.6,d.142.2.3 87661,87662 2plcA 274 7.335 c.1.18.2 29614 1g2qA 187 8.529 c.61.1.1 65117 2guiA 194 10.13 c.55.3.5 135737 1dy2A 180 12.03 d.169.1.5 42451 1vs0A 310 12.05 1o57A 291 12.52 a.4.5.40,c.61.1.1 92483,92484 1dekA 241 13.60 c.37.1.1 31842 1z7yA 322 13.84 c.79.1.1 124679 1l2tA 235 13.92 c.37.1.12 73514 1l1qA 186 14.19 c.61.1.1 77653 1gph1 465 14.42 1koe 172 16.23 2d9iA 96 16.38 1wd5A 208 16.73 c.61.1.1 114524 1j53A 186 16.98 c.55.3.5 77076 1r94A 118 20.07 b.124.1.1 97251 2cfmA 561 20.34 1e2xA 243 20.86 a.4.5.6,a.78.1.1 16113,18443 2z1cA 75 21.00 1x0gA 112 25.41 1s98A 107 26.00 b.124.1.1 105377 1nwbA 124 27.00 b.124.1.1 86296 2a6cA 83 28.63 a.35.1.13 126236 2ek5A 129 29.33 1vdmA 153 30.01 c.61.1.1 119994 2a9oA 120 31.53 c.23.1.1 126444 1vctA 205 31.90 a.7.12.1,d.286.1.1 119986,119987 1rqpA 299 33.14 b.141.1.1,c.132.1.1 97754,97755 2ebuA 112 35.28 1j54A 186 36.30 c.55.3.5 77077 2zayA 147 38.38 1mjcA 69 41.09 b.40.4.5 25319 1ciqA 40 41.27 d.40.1.1 38576 2vdxA 373 43.16 1xm7A 195 43.74 d.159.1.8 115473 1vqoA 240 45.12 b.34.5.3,b.40.4.5 120361,120362 2jbhA 225 46.52 2zmvA 227 46.67 1p5jA 372 46.75 c.79.1.1 104067 1pwhA 327 48.41 c.79.1.1 95224 2o38A 120 48.73 1zunB 434 49.03 b.43.3.1,b.44.1.1,c.37.1.8 125677,125678,125679 1u9yA 284 49.27 c.61.1.2,c.61.1.2 119655,119656 1q46A 175 49.77 a.60.14.1,b.40.4.5 111594,111595 1jj2A 239 51.47 b.34.5.3,b.40.4.5 63084,63085 1s8nA 205 53.17 c.23.1.1 105374 1u0sY 118 53.96 c.23.1.1 107566 1h95A 79 56.38 b.40.4.5 65742 3b2nA 133 56.96 2achA 360 58.52 e.1.1.1 42626 1qlpA 394 59.22 e.1.1.1 42628 1mb3A 124 59.94 c.23.1.1 78907 2f4nA 273 60.56 2vsnA 568 60.96 2di3A 239 62.30 1mvoA 136 64.90 c.23.1.1 79513 1fxlA 167 65.89 d.58.7.1,d.58.7.1 39183,39184 1dkuA 317 66.08 c.61.1.2,c.61.1.2 34118,34119 2a19A 175 66.10 1zh2A 121 66.36 c.23.1.1 125069 1dar 691 68.14 1kgsA 225 68.29 a.4.6.1,c.23.1.1 68596,68597 1xhfA 123 69.66 c.23.1.1 122003 3cu5A 141 70.12 3cg0A 140 71.06 3cfyA 137 73.30 2cw5A 255 75.52 2or2A 296 76.75 3by6A 126 76.83 1ta9A 450 78.21 2igbA 179 79.74 2a2pA 129 80.07 c.47.1.23 126051 1uheA 97 80.49 1csp 67 80.70 1ab6A 125 82.13 c.23.1.1 31054 3dahA 319 82.80 2pqmA 343 83.28 3cnbA 143 83.35 1ipaA 274 85.39 c.116.1.1,d.79.3.3 71254,71255 1ab5A 125 86.13 c.23.1.1 31056 2q6kA 283 86.73 1yn9A 169 89.88