# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2opgA 98 1.05e-16 2f0aA 98 3.56e-16 b.36.1.1 132661 2i1nA 102 3.76e-16 2iwnA 97 4.66e-16 2awxA 105 5.02e-16 1x45A 98 5.41e-16 b.36.1.1 121679 1tp5A 119 6.60e-16 b.36.1.1 119305 2fneA 117 9.40e-16 b.36.1.1 133813 2he2A 102 1.03e-15 2qg1A 92 1.03e-15 2jikA 101 1.09e-15 2fe5A 94 1.13e-15 b.36.1.1 133323 2i04A 85 1.18e-15 2q9vA 90 1.34e-15 2jilA 97 1.55e-15 2gzvA 114 1.89e-15 1n7eA 97 2.21e-15 b.36.1.1 91691 1pdr 99 2.70e-15 1kwaA 88 2.70e-15 b.36.1.1 24772 2qt5A 200 2.92e-15 1qauA 112 4.76e-15 b.36.1.1 24779 1g9oA 91 4.92e-15 b.36.1.1 60400 2egoA 96 7.30e-15 2h2bA 107 8.46e-15 2iwoA 120 9.13e-15 1nf3C 128 9.66e-15 b.36.1.1 85596 1ihjA 98 1.14e-14 b.36.1.1 62382 2ozfA 92 1.14e-14 1wf7A 103 1.58e-14 b.36.1.1 114577 2pa1A 87 1.98e-14 2eaqA 90 2.01e-14 2uzcA 88 2.06e-14 2h3lA 103 2.55e-14 b.36.1.1 136046 2pktA 91 2.67e-14 1qavA 90 2.98e-14 b.36.1.1 24777 1be9A 119 4.09e-14 b.36.1.1 24774 2vphA 100 7.23e-14 1q3oA 109 8.49e-14 b.36.1.1 95700 1v5lA 103 1.38e-13 b.36.1.1 108378 2q3gA 89 1.46e-13 2he4A 90 1.74e-13 1mfgA 95 1.98e-13 b.36.1.1 79043 2ocsA 88 2.57e-13 2qkvA 96 2.83e-13 1l6oA 95 3.10e-13 b.36.1.1 84534 1m5zA 91 3.95e-13 b.36.1.1 78676 1i92A 91 6.56e-13 b.36.1.1 61990 1qavB 115 7.35e-13 b.36.1.1 24780 2fcfA 103 1.07e-12 b.36.1.1 133267 2rczA 81 1.19e-12 1fc6A 388 1.66e-12 b.36.1.3,c.14.1.2 64738,64739 2reyA 100 2.01e-12 1b8qA 127 2.14e-12 b.36.1.1 24781 2f5yA 91 2.78e-12 b.36.1.1 133015 1r6jA 82 6.42e-12 b.36.1.1 97151 3bpuA 88 6.72e-11 1ky9A 448 5.04e-09 b.36.1.4,b.47.1.1 73198,73199 2p3wA 112 5.94e-07 1lcyA 325 1.83e-06 b.36.1.4,b.47.1.1 73834,73835 2i6vA 87 2.53e-06 2z9iA 324 3.95e-06 2adzA 178 4.94e-06 b.55.1.1 126599 1y8tA 324 6.55e-06 b.36.1.4,b.47.1.1 122763,122764 1te0A 318 9.51e-06 b.36.1.4,b.47.1.1 112400,112401 1sotA 320 4.89e-05 b.36.1.4,b.47.1.1 105852,105853 1n6eA 1071 0.002011 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1k32A 1045 0.005496 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 0.1175 c.14.1.2 66425 2ps1A 226 0.3147 1lh0A 213 0.4120 c.61.1.1 73896 2yzkA 178 0.6113 1oroA 213 0.7071 c.61.1.1 34093 1y0bA 197 0.9874 c.61.1.1 122476 2p1zA 180 1.134 1ao0A 459 1.260 c.61.1.1,d.153.1.1 34049,41816 2q07A 306 1.433 2aeeA 211 1.709 c.61.1.1 126620 1zn8A 180 1.814 c.61.1.1 125376 1l1qA 186 2.565 c.61.1.1 77653 1ecfA 504 2.828 c.61.1.1,d.153.1.1 34053,41820 2dy0A 190 3.046 1opr 213 3.885 1dekA 241 5.824 c.37.1.1 31842 2jsnA 96 6.197 1vchA 175 6.418 c.61.1.1 119980 1g0rA 293 10.96 c.68.1.6 34532 1z7yA 322 13.55 c.79.1.1 124679 1ckmA 330 13.71 b.40.4.6,d.142.2.3 25358,41585 1qb7A 236 17.31 c.61.1.1 34087 2plcA 274 21.08 c.1.18.2 29614 2guiA 194 21.83 c.55.3.5 135737 1p16A 395 23.34 b.40.4.6,d.142.2.3 87661,87662 1u9yA 284 25.33 c.61.1.2,c.61.1.2 119655,119656 1gph1 465 27.01 2igbA 179 28.11 1ta9A 450 30.57 1r94A 118 31.52 b.124.1.1 97251 1s98A 107 32.51 b.124.1.1 105377 3dahA 319 34.74 1g2qA 187 34.85 c.61.1.1 65117 1djqA 729 35.17 c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 1wd5A 208 38.08 c.61.1.1 114524 1xhfA 123 39.10 c.23.1.1 122003 2g8mA 264 41.61 2g8oA 264 42.94 d.117.1.1 134779 1h95A 79 44.54 b.40.4.5 65742 2a9oA 120 45.07 c.23.1.1 126444 1q33A 292 47.36 d.113.1.1 95657 1vs0A 310 49.05 1j53A 186 50.82 c.55.3.5 77076 2d9iA 96 51.19 1q46A 175 54.12 a.60.14.1,b.40.4.5 111594,111595 1j54A 186 54.72 c.55.3.5 77077 1ecfB 504 55.54 c.61.1.1,d.153.1.1 34054,41821 3cu5A 141 58.19 3ce9A 354 60.68 1ypvA 313 60.90 1dy2A 180 61.63 d.169.1.5 42451 1rqpA 299 62.00 b.141.1.1,c.132.1.1 97754,97755 1vdmA 153 63.81 c.61.1.1 119994 1zgzA 122 64.16 c.23.1.1 125065 1mjcA 69 65.64 b.40.4.5 25319 1dkuA 317 67.40 c.61.1.2,c.61.1.2 34118,34119 3c3mA 138 67.90 2ahrA 259 77.99 a.100.1.10,c.2.1.6 126775,126776 2cs7A 55 80.65 d.9.2.1 130748 1csp 67 83.35 1pt6A 213 83.54 c.62.1.1 95091 2v40A 459 84.40 1kgsA 225 84.79 a.4.6.1,c.23.1.1 68596,68597 2cy5A 140 86.00 b.55.1.2 131018 2jbhA 225 86.32 3b2nA 133 87.18 1e2xA 243 88.76 a.4.5.6,a.78.1.1 16113,18443 2ek5A 129 89.94