# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2opgA 98 1.90e-16 2f0aA 98 5.47e-16 b.36.1.1 132661 1x45A 98 6.74e-16 b.36.1.1 121679 2i1nA 102 7.82e-16 2iwnA 97 8.29e-16 2awxA 105 8.74e-16 1tp5A 119 1.27e-15 b.36.1.1 119305 2fe5A 94 1.48e-15 b.36.1.1 133323 2i04A 85 1.60e-15 2qg1A 92 1.64e-15 2he2A 102 1.88e-15 2jikA 101 1.95e-15 2fneA 117 1.98e-15 b.36.1.1 133813 2q9vA 90 2.54e-15 2jilA 97 2.71e-15 1n7eA 97 3.17e-15 b.36.1.1 91691 2gzvA 114 3.68e-15 1kwaA 88 4.19e-15 b.36.1.1 24772 1pdr 99 5.09e-15 2qt5A 200 5.60e-15 1qauA 112 7.07e-15 b.36.1.1 24779 1g9oA 91 1.05e-14 b.36.1.1 60400 2iwoA 120 1.16e-14 2egoA 96 1.28e-14 2h2bA 107 1.40e-14 1nf3C 128 1.44e-14 b.36.1.1 85596 1ihjA 98 1.62e-14 b.36.1.1 62382 1wf7A 103 2.17e-14 b.36.1.1 114577 2ozfA 92 2.65e-14 2uzcA 88 3.09e-14 2h3lA 103 3.38e-14 b.36.1.1 136046 1qavA 90 3.57e-14 b.36.1.1 24777 2pa1A 87 3.85e-14 2eaqA 90 3.93e-14 2pktA 91 4.10e-14 1be9A 119 8.72e-14 b.36.1.1 24774 2vphA 100 1.28e-13 1q3oA 109 1.67e-13 b.36.1.1 95700 1v5lA 103 1.87e-13 b.36.1.1 108378 2q3gA 89 1.98e-13 1mfgA 95 2.35e-13 b.36.1.1 79043 2ocsA 88 3.62e-13 2he4A 90 3.81e-13 2qkvA 96 4.20e-13 1l6oA 95 4.62e-13 b.36.1.1 84534 1m5zA 91 5.94e-13 b.36.1.1 78676 1qavB 115 1.30e-12 b.36.1.1 24780 2fcfA 103 1.45e-12 b.36.1.1 133267 2rczA 81 1.50e-12 1i92A 91 1.87e-12 b.36.1.1 61990 2reyA 100 2.67e-12 1fc6A 388 2.72e-12 b.36.1.3,c.14.1.2 64738,64739 1b8qA 127 2.85e-12 b.36.1.1 24781 2f5yA 91 3.79e-12 b.36.1.1 133015 1r6jA 82 9.51e-12 b.36.1.1 97151 3bpuA 88 7.79e-11 1ky9A 448 6.54e-09 b.36.1.4,b.47.1.1 73198,73199 2p3wA 112 1.45e-06 1lcyA 325 2.63e-06 b.36.1.4,b.47.1.1 73834,73835 2adzA 178 4.65e-06 b.55.1.1 126599 2i6vA 87 5.94e-06 2z9iA 324 8.29e-06 1y8tA 324 1.24e-05 b.36.1.4,b.47.1.1 122763,122764 1te0A 318 1.81e-05 b.36.1.4,b.47.1.1 112400,112401 1sotA 320 6.14e-05 b.36.1.4,b.47.1.1 105852,105853 1n6eA 1071 0.004584 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1k32A 1045 0.01749 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 0.1716 c.14.1.2 66425 2ps1A 226 0.3894 1lh0A 213 0.6083 c.61.1.1 73896 1oroA 213 0.6870 c.61.1.1 34093 2yzkA 178 0.7009 1y0bA 197 1.319 c.61.1.1 122476 2p1zA 180 1.347 2aeeA 211 1.884 c.61.1.1 126620 2q07A 306 2.275 1zn8A 180 3.132 c.61.1.1 125376 1ao0A 459 3.715 c.61.1.1,d.153.1.1 34049,41816 1ecfA 504 4.167 c.61.1.1,d.153.1.1 34053,41820 1l1qA 186 5.005 c.61.1.1 77653 1opr 213 5.030 2dy0A 190 5.054 1dekA 241 6.839 c.37.1.1 31842 1vchA 175 9.143 c.61.1.1 119980 2jsnA 96 11.80 1z7yA 322 12.26 c.79.1.1 124679 1g0rA 293 12.51 c.68.1.6 34532 1ckmA 330 16.33 b.40.4.6,d.142.2.3 25358,41585 2guiA 194 17.15 c.55.3.5 135737 2plcA 274 22.51 c.1.18.2 29614 1qb7A 236 24.35 c.61.1.1 34087 1u9yA 284 26.42 c.61.1.2,c.61.1.2 119655,119656 1ta9A 450 27.05 2g8mA 264 36.45 1xhfA 123 36.80 c.23.1.1 122003 2g8oA 264 36.84 d.117.1.1 134779 1p16A 395 40.19 b.40.4.6,d.142.2.3 87661,87662 2a9oA 120 40.22 c.23.1.1 126444 2igbA 179 40.28 1j54A 186 40.87 c.55.3.5 77077 1g2qA 187 41.18 c.61.1.1 65117 1wd5A 208 42.13 c.61.1.1 114524 1djqA 729 45.00 c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 3dahA 319 45.83 3cu5A 141 46.71 1j53A 186 47.01 c.55.3.5 77076 3ce9A 354 50.08 3c3mA 138 50.59 1ypvA 313 56.64 1q33A 292 59.54 d.113.1.1 95657 1s98A 107 63.01 b.124.1.1 105377 1dkuA 317 63.25 c.61.1.2,c.61.1.2 34118,34119 1dy2A 180 63.52 d.169.1.5 42451 2d9iA 96 65.90 2ahrA 259 66.74 a.100.1.10,c.2.1.6 126775,126776 1r94A 118 67.05 b.124.1.1 97251 1vctA 205 67.20 a.7.12.1,d.286.1.1 119986,119987 1vdmA 153 67.32 c.61.1.1 119994 1h95A 79 69.66 b.40.4.5 65742 1zgzA 122 71.52 c.23.1.1 125065 1mb3A 124 76.32 c.23.1.1 78907 1kgsA 225 78.28 a.4.6.1,c.23.1.1 68596,68597 1rqpA 299 78.88 b.141.1.1,c.132.1.1 97754,97755 1zh2A 121 82.29 c.23.1.1 125069 1yqgA 263 82.52 1xm7A 195 83.98 d.159.1.8 115473 1vs0A 310 84.47 1u0sY 118 85.19 c.23.1.1 107566 1zesA 125 85.91 c.23.1.1 124994 2pl1A 121 86.42 3chy 128 87.75 1pt6A 213 88.68 c.62.1.1 95091 2jbhA 225 89.54