# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2opgA 98 3.14e-17 2f0aA 98 1.11e-16 b.36.1.1 132661 1x45A 98 1.20e-16 b.36.1.1 121679 2iwnA 97 1.27e-16 2i1nA 102 1.28e-16 2awxA 105 1.66e-16 1tp5A 119 2.16e-16 b.36.1.1 119305 2he2A 102 2.77e-16 2fneA 117 2.83e-16 b.36.1.1 133813 2fe5A 94 2.88e-16 b.36.1.1 133323 2qg1A 92 2.96e-16 2i04A 85 3.00e-16 2jikA 101 3.59e-16 2q9vA 90 4.15e-16 2jilA 97 4.94e-16 1n7eA 97 5.67e-16 b.36.1.1 91691 2gzvA 114 6.63e-16 1pdr 99 7.77e-16 1kwaA 88 7.90e-16 b.36.1.1 24772 2qt5A 200 1.03e-15 1qauA 112 1.21e-15 b.36.1.1 24779 2iwoA 120 1.97e-15 1nf3C 128 2.47e-15 b.36.1.1 85596 2egoA 96 2.51e-15 1g9oA 91 2.57e-15 b.36.1.1 60400 2h2bA 107 3.09e-15 1ihjA 98 3.50e-15 b.36.1.1 62382 2ozfA 92 5.20e-15 1wf7A 103 5.46e-15 b.36.1.1 114577 2h3lA 103 6.49e-15 b.36.1.1 136046 1qavA 90 7.53e-15 b.36.1.1 24777 2uzcA 88 8.03e-15 2pa1A 87 9.08e-15 2eaqA 90 9.32e-15 2pktA 91 1.02e-14 1be9A 119 1.81e-14 b.36.1.1 24774 2vphA 100 3.10e-14 1q3oA 109 3.72e-14 b.36.1.1 95700 1v5lA 103 4.61e-14 b.36.1.1 108378 2q3gA 89 5.25e-14 1mfgA 95 5.98e-14 b.36.1.1 79043 2he4A 90 8.80e-14 2qkvA 96 9.18e-14 2ocsA 88 9.82e-14 1l6oA 95 1.31e-13 b.36.1.1 84534 1m5zA 91 1.40e-13 b.36.1.1 78676 1qavB 115 2.95e-13 b.36.1.1 24780 2fcfA 103 3.24e-13 b.36.1.1 133267 2rczA 81 3.34e-13 1i92A 91 4.76e-13 b.36.1.1 61990 2reyA 100 7.02e-13 1b8qA 127 7.49e-13 b.36.1.1 24781 2f5yA 91 1.07e-12 b.36.1.1 133015 1fc6A 388 1.16e-12 b.36.1.3,c.14.1.2 64738,64739 1r6jA 82 3.54e-12 b.36.1.1 97151 3bpuA 88 2.61e-11 1ky9A 448 2.86e-09 b.36.1.4,b.47.1.1 73198,73199 2p3wA 112 7.33e-07 1lcyA 325 1.32e-06 b.36.1.4,b.47.1.1 73834,73835 2adzA 178 2.87e-06 b.55.1.1 126599 2i6vA 87 3.29e-06 2z9iA 324 5.25e-06 1y8tA 324 8.15e-06 b.36.1.4,b.47.1.1 122763,122764 1te0A 318 9.41e-06 b.36.1.4,b.47.1.1 112400,112401 1sotA 320 3.21e-05 b.36.1.4,b.47.1.1 105852,105853 1n6eA 1071 0.003905 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1k32A 1045 0.01461 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 0.1901 c.14.1.2 66425 1lh0A 213 0.3307 c.61.1.1 73896 2ps1A 226 0.3821 2yzkA 178 0.4323 1oroA 213 0.4885 c.61.1.1 34093 2aeeA 211 1.203 c.61.1.1 126620 2p1zA 180 1.365 1y0bA 197 1.824 c.61.1.1 122476 2q07A 306 1.912 1ao0A 459 2.449 c.61.1.1,d.153.1.1 34049,41816 1zn8A 180 2.570 c.61.1.1 125376 2dy0A 190 2.596 1ecfA 504 5.212 c.61.1.1,d.153.1.1 34053,41820 1opr 213 5.534 1l1qA 186 5.670 c.61.1.1 77653 1dekA 241 7.666 c.37.1.1 31842 1vchA 175 10.32 c.61.1.1 119980 1ckmA 330 10.76 b.40.4.6,d.142.2.3 25358,41585 1z7yA 322 11.65 c.79.1.1 124679 1g0rA 293 11.66 c.68.1.6 34532 2jsnA 96 12.84 2guiA 194 15.70 c.55.3.5 135737 2plcA 274 22.74 c.1.18.2 29614 1qb7A 236 26.81 c.61.1.1 34087 1xhfA 123 30.89 c.23.1.1 122003 2a9oA 120 31.13 c.23.1.1 126444 1q33A 292 31.43 d.113.1.1 95657 1ta9A 450 32.12 1j54A 186 35.94 c.55.3.5 77077 2g8mA 264 39.14 1j53A 186 40.05 c.55.3.5 77076 2g8oA 264 40.10 d.117.1.1 134779 3cu5A 141 41.45 1u9yA 284 42.38 c.61.1.2,c.61.1.2 119655,119656 1djqA 729 45.35 c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 1h95A 79 45.94 b.40.4.5 65742 2igbA 179 46.93 3c3mA 138 51.28 1p16A 395 51.34 b.40.4.6,d.142.2.3 87661,87662 3ce9A 354 54.34 1ypvA 313 55.63 1zgzA 122 55.86 c.23.1.1 125065 1s98A 107 57.09 b.124.1.1 105377 1vctA 205 58.34 a.7.12.1,d.286.1.1 119986,119987 2d9iA 96 60.73 1dy2A 180 62.77 d.169.1.5 42451 1r94A 118 62.87 b.124.1.1 97251 1wd5A 208 63.40 c.61.1.1 114524 2ahrA 259 65.34 a.100.1.10,c.2.1.6 126775,126776 1u0sY 118 67.64 c.23.1.1 107566 3dahA 319 67.88 1xm7A 195 72.25 d.159.1.8 115473 1rqpA 299 73.36 b.141.1.1,c.132.1.1 97754,97755 1g2qA 187 73.59 c.61.1.1 65117 1mb3A 124 77.19 c.23.1.1 78907 1vs0A 310 77.44 1kgsA 225 78.57 a.4.6.1,c.23.1.1 68596,68597 1zh2A 121 80.50 c.23.1.1 125069 1mjcA 69 81.54 b.40.4.5 25319 2zayA 147 81.86 1p5jA 372 82.20 c.79.1.1 104067 2zctA 249 82.20 1vdmA 153 82.86 c.61.1.1 119994 3chy 128 84.73 1gph1 465 85.75 1diwA 441 89.04 b.29.1.6,b.42.4.2 24264,25609