# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2opgA	98	2.41e-11		
2i1nA	102	4.71e-11		
2jikA	101	5.14e-11		
2fe5A	94	5.68e-11	b.36.1.1	133323
2awxA	105	6.23e-11		
2iwnA	97	8.14e-11		
2he2A	102	8.23e-11		
1x45A	98	8.99e-11	b.36.1.1	121679
2fneA	117	9.18e-11	b.36.1.1	133813
2jilA	97	9.62e-11		
2i04A	85	1.14e-10		
2q9vA	90	1.33e-10		
1tp5A	119	1.50e-10	b.36.1.1	119305
1pdr	99	1.64e-10		
2gzvA	114	1.75e-10		
2qg1A	92	1.85e-10		
2f0aA	98	1.93e-10	b.36.1.1	132661
2h2bA	107	2.57e-10		
1n7eA	97	2.72e-10	b.36.1.1	91691
1g9oA	91	2.97e-10	b.36.1.1	60400
2iwoA	120	3.22e-10		
1kwaA	88	3.86e-10	b.36.1.1	24772
1wf7A	103	5.01e-10	b.36.1.1	114577
2h3lA	103	5.03e-10	b.36.1.1	136046
1qauA	112	5.45e-10	b.36.1.1	24779
2qt5A	200	5.99e-10		
2ozfA	92	6.03e-10		
2egoA	96	6.31e-10		
2uzcA	88	6.73e-10		
1ihjA	98	6.87e-10	b.36.1.1	62382
1qavA	90	7.01e-10	b.36.1.1	24777
1nf3C	128	1.12e-09	b.36.1.1	85596
2pktA	91	1.32e-09		
2pa1A	87	1.56e-09		
2q3gA	89	1.66e-09		
1be9A	119	1.70e-09	b.36.1.1	24774
2eaqA	90	2.29e-09		
1mfgA	95	2.70e-09	b.36.1.1	79043
1q3oA	109	2.90e-09	b.36.1.1	95700
1v5lA	103	3.08e-09	b.36.1.1	108378
2vphA	100	5.85e-09		
2qkvA	96	5.98e-09		
1i92A	91	6.00e-09	b.36.1.1	61990
1m5zA	91	6.56e-09	b.36.1.1	78676
2he4A	90	6.86e-09		
1l6oA	95	7.80e-09	b.36.1.1	84534
2fcfA	103	8.85e-09	b.36.1.1	133267
2ocsA	88	1.14e-08		
1qavB	115	1.85e-08	b.36.1.1	24780
1b8qA	127	2.10e-08	b.36.1.1	24781
2f5yA	91	3.15e-08	b.36.1.1	133015
2rczA	81	3.31e-08		
1r6jA	82	3.39e-08	b.36.1.1	97151
1fc6A	388	3.87e-08	b.36.1.3,c.14.1.2	64738,64739
2reyA	100	5.23e-08		
3bpuA	88	2.77e-07		
1ky9A	448	1.72e-05	b.36.1.4,b.47.1.1	73198,73199
1lcyA	325	0.000197	b.36.1.4,b.47.1.1	73834,73835
2p3wA	112	0.000241		
2i6vA	87	0.000430		
2z9iA	324	0.000658		
1te0A	318	0.000896	b.36.1.4,b.47.1.1	112400,112401
1y8tA	324	0.001367	b.36.1.4,b.47.1.1	122763,122764
1sotA	320	0.002195	b.36.1.4,b.47.1.1	105852,105853
2adzA	178	0.007540	b.55.1.1	126599
1n6eA	1071	0.3253	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	80149,80150,80151,80152
1k32A	1045	0.5334	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2ps1A	226	9.838		
2q07A	306	10.97		
1lh0A	213	13.84	c.61.1.1	73896
1oroA	213	15.09	c.61.1.1	34093
1j7xA	302	18.45	c.14.1.2	66425
2d9iA	96	20.87		
1opr	213	31.70		
2jsnA	96	32.45		
2guiA	194	36.89	c.55.3.5	135737
1y0bA	197	37.65	c.61.1.1	122476
1ta9A	450	38.18		
1z7yA	322	39.09	c.79.1.1	124679
3ce9A	354	40.81		
2ek5A	129	41.95		
2yzkA	178	43.20		
1dekA	241	44.65	c.37.1.1	31842
2zmvA	227	46.58		
2vdxA	373	53.56		
2aeeA	211	57.05	c.61.1.1	126620
1ao0A	459	58.08	c.61.1.1,d.153.1.1	34049,41816
1dy2A	180	62.70	d.169.1.5	42451
1ckmA	330	70.10	b.40.4.6,d.142.2.3	25358,41585
2p1zA	180	73.22		
1ypxA	375	77.38		
1j53A	186	80.33	c.55.3.5	77076
1as4A	341	84.22	e.1.1.1	42623
1q33A	292	86.38	d.113.1.1	95657
1qlpA	394	87.55	e.1.1.1	42628