# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2opgA 98 8.97e-16 2iwnA 97 2.47e-15 2awxA 105 2.59e-15 2f0aA 98 3.67e-15 b.36.1.1 132661 1tp5A 119 3.98e-15 b.36.1.1 119305 2i1nA 102 4.10e-15 2fe5A 94 4.72e-15 b.36.1.1 133323 2jilA 97 4.93e-15 2he2A 102 4.97e-15 2fneA 117 5.25e-15 b.36.1.1 133813 1x45A 98 6.37e-15 b.36.1.1 121679 2jikA 101 7.52e-15 2qg1A 92 8.23e-15 1pdr 99 1.10e-14 2i04A 85 1.40e-14 1kwaA 88 1.94e-14 b.36.1.1 24772 2q9vA 90 2.07e-14 2gzvA 114 2.08e-14 1qauA 112 2.19e-14 b.36.1.1 24779 1g9oA 91 2.96e-14 b.36.1.1 60400 2iwoA 120 3.22e-14 2qt5A 200 3.48e-14 1n7eA 97 3.56e-14 b.36.1.1 91691 1nf3C 128 4.98e-14 b.36.1.1 85596 2h2bA 107 5.22e-14 2egoA 96 5.74e-14 1ihjA 98 7.29e-14 b.36.1.1 62382 2ozfA 92 8.24e-14 2h3lA 103 1.31e-13 b.36.1.1 136046 2uzcA 88 1.31e-13 1qavA 90 1.46e-13 b.36.1.1 24777 2pa1A 87 1.59e-13 2eaqA 90 1.62e-13 2pktA 91 1.73e-13 1be9A 119 2.04e-13 b.36.1.1 24774 1wf7A 103 2.24e-13 b.36.1.1 114577 1q3oA 109 4.37e-13 b.36.1.1 95700 2vphA 100 5.03e-13 2q3gA 89 5.14e-13 2he4A 90 8.00e-13 1v5lA 103 9.13e-13 b.36.1.1 108378 1mfgA 95 9.56e-13 b.36.1.1 79043 2qkvA 96 9.85e-13 2ocsA 88 1.39e-12 1l6oA 95 1.56e-12 b.36.1.1 84534 1i92A 91 2.59e-12 b.36.1.1 61990 1m5zA 91 3.66e-12 b.36.1.1 78676 2reyA 100 4.32e-12 2fcfA 103 4.51e-12 b.36.1.1 133267 2rczA 81 4.78e-12 1qavB 115 5.01e-12 b.36.1.1 24780 1b8qA 127 8.43e-12 b.36.1.1 24781 2f5yA 91 1.80e-11 b.36.1.1 133015 1fc6A 388 2.38e-11 b.36.1.3,c.14.1.2 64738,64739 1r6jA 82 4.35e-11 b.36.1.1 97151 3bpuA 88 2.02e-10 1ky9A 448 2.42e-08 b.36.1.4,b.47.1.1 73198,73199 2p3wA 112 2.65e-06 1lcyA 325 3.11e-06 b.36.1.4,b.47.1.1 73834,73835 2adzA 178 5.31e-06 b.55.1.1 126599 2z9iA 324 1.46e-05 1te0A 318 2.11e-05 b.36.1.4,b.47.1.1 112400,112401 1y8tA 324 2.23e-05 b.36.1.4,b.47.1.1 122763,122764 2i6vA 87 2.50e-05 1sotA 320 9.33e-05 b.36.1.4,b.47.1.1 105852,105853 1n6eA 1071 0.006800 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1k32A 1045 0.02364 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2ps1A 226 0.2492 1j7xA 302 0.2810 c.14.1.2 66425 2aeeA 211 0.5989 c.61.1.1 126620 1lh0A 213 0.7578 c.61.1.1 73896 1oroA 213 0.8267 c.61.1.1 34093 2yzkA 178 0.9204 2p1zA 180 1.293 1ao0A 459 1.710 c.61.1.1,d.153.1.1 34049,41816 2dy0A 190 2.483 2q07A 306 2.762 1zn8A 180 2.958 c.61.1.1 125376 1y0bA 197 3.690 c.61.1.1 122476 1l1qA 186 4.928 c.61.1.1 77653 1ecfA 504 6.184 c.61.1.1,d.153.1.1 34053,41820 1opr 213 6.671 2jsnA 96 6.864 1dekA 241 10.50 c.37.1.1 31842 1z7yA 322 12.80 c.79.1.1 124679 1ckmA 330 16.66 b.40.4.6,d.142.2.3 25358,41585 1qb7A 236 17.20 c.61.1.1 34087 1vchA 175 17.61 c.61.1.1 119980 2guiA 194 19.36 c.55.3.5 135737 1g2qA 187 20.29 c.61.1.1 65117 1q33A 292 22.36 d.113.1.1 95657 2plcA 274 23.38 c.1.18.2 29614 1g0rA 293 23.57 c.68.1.6 34532 2igbA 179 26.20 1djqA 729 26.20 c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 1gph1 465 35.24 3cu5A 141 36.89 1ta9A 450 38.35 1dy2A 180 38.96 d.169.1.5 42451 1l2tA 235 40.52 c.37.1.12 73514 1wd5A 208 41.65 c.61.1.1 114524 1p16A 395 42.37 b.40.4.6,d.142.2.3 87661,87662 1j54A 186 43.68 c.55.3.5 77077 1u9yA 284 43.91 c.61.1.2,c.61.1.2 119655,119656 2d9iA 96 48.06 2g8mA 264 52.29 2g8oA 264 53.03 d.117.1.1 134779 1j53A 186 54.86 c.55.3.5 77076 2a19A 175 56.54 1xhfA 123 58.28 c.23.1.1 122003 1mjcA 69 58.75 b.40.4.5 25319 1h95A 79 61.41 b.40.4.5 65742 1r94A 118 66.94 b.124.1.1 97251 1vdmA 153 66.99 c.61.1.1 119994 3ce9A 354 69.01 1s98A 107 71.83 b.124.1.1 105377 1mb3A 124 72.95 c.23.1.1 78907 1u0sY 118 73.23 c.23.1.1 107566 2a9oA 120 74.55 c.23.1.1 126444 1e2xA 243 74.55 a.4.5.6,a.78.1.1 16113,18443 1xm7A 195 76.20 d.159.1.8 115473 1nvpC 76 76.51 b.56.1.1 92212 1kgsA 225 78.57 a.4.6.1,c.23.1.1 68596,68597 2ek5A 129 79.07 1vctA 205 80.04 a.7.12.1,d.286.1.1 119986,119987 2jbhA 225 81.35 3c3mA 138 84.49 1csp 67 89.63