# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2opgA	98	1.11e-16		
2iwnA	97	2.87e-16		
2jilA	97	2.93e-16		
2he2A	102	3.00e-16		
2awxA	105	3.30e-16		
2i1nA	102	4.44e-16		
2f0aA	98	5.32e-16	b.36.1.1	132661
2fe5A	94	6.01e-16	b.36.1.1	133323
2fneA	117	6.35e-16	b.36.1.1	133813
1tp5A	119	6.96e-16	b.36.1.1	119305
2iwoA	120	7.29e-16		
1x45A	98	8.22e-16	b.36.1.1	121679
2qg1A	92	8.29e-16		
1kwaA	88	8.95e-16	b.36.1.1	24772
2jikA	101	1.13e-15		
1pdr	99	1.70e-15		
2gzvA	114	1.95e-15		
2i04A	85	2.01e-15		
2qt5A	200	2.65e-15		
1wf7A	103	3.15e-15	b.36.1.1	114577
1qauA	112	3.36e-15	b.36.1.1	24779
2q9vA	90	3.37e-15		
1n7eA	97	4.44e-15	b.36.1.1	91691
1g9oA	91	4.99e-15	b.36.1.1	60400
2eaqA	90	7.51e-15		
2egoA	96	8.61e-15		
1qavA	90	1.02e-14	b.36.1.1	24777
2h2bA	107	1.03e-14		
1ihjA	98	1.03e-14	b.36.1.1	62382
2ozfA	92	1.06e-14		
2pktA	91	1.10e-14		
2uzcA	88	2.04e-14		
2h3lA	103	2.48e-14	b.36.1.1	136046
2pa1A	87	3.04e-14		
1nf3C	128	3.23e-14	b.36.1.1	85596
2vphA	100	3.49e-14		
2he4A	90	5.91e-14		
1q3oA	109	9.15e-14	b.36.1.1	95700
2qkvA	96	1.08e-13		
2q3gA	89	1.12e-13		
1mfgA	95	1.23e-13	b.36.1.1	79043
1m5zA	91	1.29e-13	b.36.1.1	78676
1be9A	119	1.42e-13	b.36.1.1	24774
2ocsA	88	2.14e-13		
1v5lA	103	2.36e-13	b.36.1.1	108378
1l6oA	95	3.58e-13	b.36.1.1	84534
2reyA	100	4.04e-13		
1qavB	115	4.64e-13	b.36.1.1	24780
1i92A	91	5.99e-13	b.36.1.1	61990
2fcfA	103	9.20e-13	b.36.1.1	133267
2rczA	81	9.72e-13		
1b8qA	127	1.40e-12	b.36.1.1	24781
2f5yA	91	4.32e-12	b.36.1.1	133015
1r6jA	82	7.91e-12	b.36.1.1	97151
3bpuA	88	3.08e-11		
1fc6A	388	2.64e-09	b.36.1.3,c.14.1.2	64738,64739
1lcyA	325	7.05e-07	b.36.1.4,b.47.1.1	73834,73835
2p3wA	112	2.00e-06		
2adzA	178	2.91e-06	b.55.1.1	126599
2i6vA	87	1.62e-05		
1ky9A	448	3.18e-05	b.36.1.4,b.47.1.1	73198,73199
1te0A	318	0.000411	b.36.1.4,b.47.1.1	112400,112401
1sotA	320	0.009491	b.36.1.4,b.47.1.1	105852,105853
1y8tA	324	0.03131	b.36.1.4,b.47.1.1	122763,122764
2aeeA	211	0.04507	c.61.1.1	126620
2z9iA	324	0.1564		
2p1zA	180	0.2467		
2ps1A	226	0.3020		
1l1qA	186	0.5138	c.61.1.1	77653
1zunB	434	0.7120	b.43.3.1,b.44.1.1,c.37.1.8	125677,125678,125679
1z7yA	322	0.7428	c.79.1.1	124679
1j7xA	302	0.7586	c.14.1.2	66425
2yzkA	178	1.391		
1y0bA	197	2.588	c.61.1.1	122476
2q07A	306	3.637		
2dy0A	190	3.916		
1zn8A	180	4.476	c.61.1.1	125376
1vchA	175	4.522	c.61.1.1	119980
1qa1A	554	4.820	b.80.1.6	28047
1vq0A	302	8.899	d.193.1.1,g.81.1.1	114000,114001
1ympA	135	8.941		
3bpkA	206	10.00		
2r3uA	211	10.20		
1gq2A	555	10.23	c.2.1.7,c.58.1.3	70308,70309
1vhoA	346	10.26	b.49.3.1,c.56.5.4	100694,100695
2epgA	487	10.36		
3vubA	101	10.43	b.34.6.1	24613
2jsnA	96	11.73		
2pcqA	283	11.93		
1dgmA	363	12.21	c.72.1.1	34936
2rghA	571	13.21		
2guiA	194	13.23	c.55.3.5	135737
2qytA	317	13.58		
2absA	383	13.80	c.72.1.1	126534
1lh0A	213	14.50	c.61.1.1	73896
1s9rA	410	14.79	d.126.1.4	98758
1ckmA	330	17.11	b.40.4.6,d.142.2.3	25358,41585
1j7jA	178	17.44	c.61.1.1	84131
1se8A	301	19.64	b.40.4.3	105448
2gj2A	85	19.93		
1ecfA	504	20.67	c.61.1.1,d.153.1.1	34053,41820
1qb7A	236	20.80	c.61.1.1	34087
1yllA	200	20.92	b.82.1.17	123653
1dy2A	180	21.48	d.169.1.5	42451
1qq1A	559	22.43	b.80.1.6	28041
1xiyA	182	22.63	c.47.1.10	122022
2dznA	228	23.79		
1cauB	184	24.36	b.82.1.2	28103
1sw2A	275	25.42	c.94.1.1	106064
1g2qA	187	26.67	c.61.1.1	65117
1ti6A	875	26.95	b.52.2.2,c.81.1.1	106974,106975
1e2xA	243	27.13	a.4.5.6,a.78.1.1	16113,18443
1rqpA	299	27.62	b.141.1.1,c.132.1.1	97754,97755
2imjA	166	27.67		
2qf3A	243	27.70		
1j53A	186	28.59	c.55.3.5	77076
1h6kX	97	31.32	d.58.7.1	60684
1arhA	396	33.25	c.67.1.1	34321
1a3c	181	34.17		
1j54A	186	34.46	c.55.3.5	77077
1yo6A	250	34.79	c.2.1.2	123769
1cf2O	337	36.08	c.2.1.3,d.81.1.1	29994,39909
2qruA	274	36.40		
1tyv	542	37.13		
2h8uA	65	39.68	g.7.1.1	136246
1xrsA	516	39.85	c.1.19.4	115883
1wqaA	455	41.59		
1vctA	205	41.62	a.7.12.1,d.286.1.1	119986,119987
1yioA	208	43.55	a.4.6.2,c.23.1.1	123326,123327
2rjnA	154	43.97		
1p5dX	463	44.32	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	94138,94139,94140,94141
3c3mA	138	45.76		
1tuoA	464	47.35		
2a19A	175	48.77		
1zh2A	121	49.38	c.23.1.1	125069
1v58A	241	50.58	c.47.1.9,d.17.3.1	108371,108372
1aiqA	264	51.43	d.117.1.1	40967
3cu5A	141	53.03		
1l0wA	580	55.17	b.40.4.1,d.74.4.1,d.104.1.1	73426,73427,73428
1p2fA	220	55.18	a.4.6.1,c.23.1.1	87720,87721
1y791	680	55.92		
2fuvA	549	56.62		
1p16A	395	57.69	b.40.4.6,d.142.2.3	87661,87662
1bg1A	722	59.84	a.47.1.1,b.2.5.5,d.93.1.1	17767,22461,40527
2f96A	224	60.58	c.55.3.5	133153
2ppvA	332	61.63		
2uwxA	494	62.17	e.3.1.1	140002
2f4nA	273	63.06		
1vdmA	153	63.08	c.61.1.1	119994
2zctA	249	63.21		
1mjcA	69	64.11	b.40.4.5	25319
3b9gA	328	64.40		
2d9iA	96	65.21		
1qisA	396	66.08	c.67.1.1	34284
3bnjA	485	66.42		
1l5zA	155	68.09	c.23.1.1	77722
1ev5A	264	69.64	d.117.1.1	40935
2v40A	459	70.93		
1zgzA	122	71.42	c.23.1.1	125065
1s8nA	205	71.44	c.23.1.1	105374
2bqxA	173	72.99		
1ha1	184	73.29		
1vc3B	97	73.48		
1tr7A	164	74.17	b.2.3.2	119328
3cfyA	137	74.89		
1u9yA	284	79.38	c.61.1.2,c.61.1.2	119655,119656
1qvbA	481	80.29	c.1.8.4	28983
1j79A	347	80.57	c.1.9.4	62675
3bilA	348	80.80		
1v0aA	178	82.02	b.18.1.30	119815
2fnaA	357	82.49	a.4.5.11,c.37.1.20	133809,133810
1r94A	118	84.81	b.124.1.1	97251
1iqaA	160	88.29	b.22.1.1	71274
1dtyA	429	88.57	c.67.1.4	34495
1sjyA	159	89.78	d.113.1.1	98900