# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2opgA 98 6.21e-16 2iwnA 97 1.62e-15 2awxA 105 1.71e-15 2i1nA 102 2.48e-15 2f0aA 98 2.78e-15 b.36.1.1 132661 2fe5A 94 2.84e-15 b.36.1.1 133323 1tp5A 119 3.10e-15 b.36.1.1 119305 2fneA 117 3.55e-15 b.36.1.1 133813 1x45A 98 3.88e-15 b.36.1.1 121679 2jilA 97 4.05e-15 2he2A 102 4.27e-15 2jikA 101 4.87e-15 2qg1A 92 6.80e-15 1pdr 99 9.21e-15 2i04A 85 1.13e-14 1kwaA 88 1.32e-14 b.36.1.1 24772 2gzvA 114 1.48e-14 1qauA 112 1.52e-14 b.36.1.1 24779 2q9vA 90 1.64e-14 1g9oA 91 2.23e-14 b.36.1.1 60400 2iwoA 120 2.48e-14 1n7eA 97 2.50e-14 b.36.1.1 91691 2qt5A 200 2.91e-14 1nf3C 128 3.37e-14 b.36.1.1 85596 2egoA 96 3.88e-14 2h2bA 107 4.34e-14 1ihjA 98 6.39e-14 b.36.1.1 62382 2ozfA 92 7.04e-14 2h3lA 103 1.01e-13 b.36.1.1 136046 2uzcA 88 1.11e-13 2pktA 91 1.12e-13 1qavA 90 1.19e-13 b.36.1.1 24777 1wf7A 103 1.47e-13 b.36.1.1 114577 2pa1A 87 1.53e-13 1be9A 119 1.65e-13 b.36.1.1 24774 2eaqA 90 1.70e-13 1q3oA 109 3.50e-13 b.36.1.1 95700 2q3gA 89 3.85e-13 2vphA 100 4.48e-13 1mfgA 95 5.49e-13 b.36.1.1 79043 2he4A 90 5.76e-13 1v5lA 103 8.66e-13 b.36.1.1 108378 2qkvA 96 9.01e-13 2ocsA 88 1.05e-12 1l6oA 95 1.54e-12 b.36.1.1 84534 1i92A 91 2.22e-12 b.36.1.1 61990 1m5zA 91 2.81e-12 b.36.1.1 78676 2fcfA 103 3.09e-12 b.36.1.1 133267 2rczA 81 3.29e-12 2reyA 100 3.76e-12 1qavB 115 3.87e-12 b.36.1.1 24780 1b8qA 127 4.30e-12 b.36.1.1 24781 2f5yA 91 1.40e-11 b.36.1.1 133015 1fc6A 388 1.99e-11 b.36.1.3,c.14.1.2 64738,64739 1r6jA 82 3.16e-11 b.36.1.1 97151 3bpuA 88 1.32e-10 1ky9A 448 1.35e-08 b.36.1.4,b.47.1.1 73198,73199 2adzA 178 2.48e-06 b.55.1.1 126599 2p3wA 112 3.56e-06 1lcyA 325 6.42e-06 b.36.1.4,b.47.1.1 73834,73835 2z9iA 324 2.42e-05 1te0A 318 3.10e-05 b.36.1.4,b.47.1.1 112400,112401 1y8tA 324 3.87e-05 b.36.1.4,b.47.1.1 122763,122764 2i6vA 87 5.09e-05 1sotA 320 0.000102 b.36.1.4,b.47.1.1 105852,105853 1n6eA 1071 0.01521 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1k32A 1045 0.06012 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 0.2215 c.14.1.2 66425 2ps1A 226 0.3266 1oroA 213 0.7493 c.61.1.1 34093 2aeeA 211 0.8273 c.61.1.1 126620 2yzkA 178 0.9041 1lh0A 213 0.9285 c.61.1.1 73896 2p1zA 180 1.363 2q07A 306 2.619 2dy0A 190 3.174 1zn8A 180 3.818 c.61.1.1 125376 1y0bA 197 4.043 c.61.1.1 122476 1l1qA 186 6.965 c.61.1.1 77653 1ao0A 459 7.157 c.61.1.1,d.153.1.1 34049,41816 1opr 213 7.365 1ecfA 504 12.92 c.61.1.1,d.153.1.1 34053,41820 1vchA 175 13.33 c.61.1.1 119980 2guiA 194 13.58 c.55.3.5 135737 1z7yA 322 13.59 c.79.1.1 124679 1dekA 241 14.96 c.37.1.1 31842 1q33A 292 14.97 d.113.1.1 95657 2plcA 274 17.17 c.1.18.2 29614 1qb7A 236 17.69 c.61.1.1 34087 2jsnA 96 18.92 2igbA 179 25.58 1g2qA 187 26.32 c.61.1.1 65117 1g0rA 293 31.25 c.68.1.6 34532 3cu5A 141 31.82 1ckmA 330 34.05 b.40.4.6,d.142.2.3 25358,41585 1j53A 186 36.14 c.55.3.5 77076 1djqA 729 39.87 c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 2d9iA 96 39.88 1j54A 186 41.09 c.55.3.5 77077 1dy2A 180 41.15 d.169.1.5 42451 1ta9A 450 41.37 1wd5A 208 48.46 c.61.1.1 114524 1xhfA 123 55.18 c.23.1.1 122003 1vdmA 153 56.76 c.61.1.1 119994 1vctA 205 57.77 a.7.12.1,d.286.1.1 119986,119987 1u9yA 284 58.05 c.61.1.2,c.61.1.2 119655,119656 2g8mA 264 65.03 1u0sY 118 65.63 c.23.1.1 107566 2g8oA 264 65.73 d.117.1.1 134779 1mb3A 124 67.15 c.23.1.1 78907 2a9oA 120 69.01 c.23.1.1 126444 3ce9A 354 70.62 1k8qA 377 70.70 c.69.1.6 72177 3c3mA 138 70.76 1p16A 395 78.32 b.40.4.6,d.142.2.3 87661,87662 1kgsA 225 82.58 a.4.6.1,c.23.1.1 68596,68597 1h6kZ 98 88.92 d.58.7.1 60686