# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2opgA	98	4.64e-16		
1x45A	98	8.09e-16	b.36.1.1	121679
2f0aA	98	1.19e-15	b.36.1.1	132661
2awxA	105	1.40e-15		
2i1nA	102	1.50e-15		
2iwnA	97	1.70e-15		
2jikA	101	2.27e-15		
2fe5A	94	2.31e-15	b.36.1.1	133323
2he2A	102	2.88e-15		
1tp5A	119	2.91e-15	b.36.1.1	119305
2jilA	97	3.23e-15		
2fneA	117	3.69e-15	b.36.1.1	133813
2i04A	85	4.49e-15		
2q9vA	90	4.74e-15		
1pdr	99	5.94e-15		
2qg1A	92	5.99e-15		
1n7eA	97	9.18e-15	b.36.1.1	91691
1kwaA	88	1.03e-14	b.36.1.1	24772
2gzvA	114	1.12e-14		
1qauA	112	1.17e-14	b.36.1.1	24779
2qt5A	200	1.67e-14		
2iwoA	120	1.98e-14		
1g9oA	91	2.38e-14	b.36.1.1	60400
2egoA	96	2.45e-14		
2h2bA	107	3.40e-14		
1wf7A	103	3.81e-14	b.36.1.1	114577
1ihjA	98	4.12e-14	b.36.1.1	62382
1nf3C	128	4.52e-14	b.36.1.1	85596
2ozfA	92	5.31e-14		
2h3lA	103	7.40e-14	b.36.1.1	136046
1qavA	90	7.46e-14	b.36.1.1	24777
2pa1A	87	8.08e-14		
2eaqA	90	8.56e-14		
2uzcA	88	9.71e-14		
2pktA	91	1.08e-13		
1be9A	119	1.89e-13	b.36.1.1	24774
1v5lA	103	2.59e-13	b.36.1.1	108378
2vphA	100	2.70e-13		
1q3oA	109	3.15e-13	b.36.1.1	95700
1mfgA	95	4.40e-13	b.36.1.1	79043
2q3gA	89	4.41e-13		
2he4A	90	5.77e-13		
1m5zA	91	8.35e-13	b.36.1.1	78676
2qkvA	96	8.84e-13		
2ocsA	88	9.84e-13		
1l6oA	95	1.09e-12	b.36.1.1	84534
2rczA	81	2.23e-12		
2reyA	100	2.85e-12		
2fcfA	103	2.96e-12	b.36.1.1	133267
1qavB	115	3.05e-12	b.36.1.1	24780
1b8qA	127	3.17e-12	b.36.1.1	24781
1i92A	91	4.87e-12	b.36.1.1	61990
1fc6A	388	1.37e-11	b.36.1.3,c.14.1.2	64738,64739
2f5yA	91	1.39e-11	b.36.1.1	133015
1r6jA	82	2.52e-11	b.36.1.1	97151
3bpuA	88	1.22e-10		
1ky9A	448	7.18e-09	b.36.1.4,b.47.1.1	73198,73199
2adzA	178	1.95e-06	b.55.1.1	126599
2p3wA	112	6.19e-06		
1lcyA	325	9.35e-06	b.36.1.4,b.47.1.1	73834,73835
2z9iA	324	2.79e-05		
1te0A	318	5.05e-05	b.36.1.4,b.47.1.1	112400,112401
1y8tA	324	5.37e-05	b.36.1.4,b.47.1.1	122763,122764
2i6vA	87	5.84e-05		
1sotA	320	8.12e-05	b.36.1.4,b.47.1.1	105852,105853
1n6eA	1071	0.03102	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	80149,80150,80151,80152
1k32A	1045	0.07743	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1j7xA	302	0.1319	c.14.1.2	66425
2ps1A	226	0.6852		
1lh0A	213	0.8200	c.61.1.1	73896
1oroA	213	1.349	c.61.1.1	34093
1ao0A	459	1.617	c.61.1.1,d.153.1.1	34049,41816
2p1zA	180	2.070		
1opr	213	2.129		
2yzkA	178	2.554		
2q07A	306	3.044		
1y0bA	197	6.191	c.61.1.1	122476
1l1qA	186	11.93	c.61.1.1	77653
2jsnA	96	12.15		
1ecfA	504	12.89	c.61.1.1,d.153.1.1	34053,41820
1dekA	241	14.29	c.37.1.1	31842
1z7yA	322	14.30	c.79.1.1	124679
2dy0A	190	14.33		
1zn8A	180	15.87	c.61.1.1	125376
2plcA	274	21.50	c.1.18.2	29614
2guiA	194	22.25	c.55.3.5	135737
1vchA	175	22.53	c.61.1.1	119980
1ckmA	330	23.92	b.40.4.6,d.142.2.3	25358,41585
1g0rA	293	25.10	c.68.1.6	34532
1ta9A	450	26.07		
2d9iA	96	39.94		
1h95A	79	47.55	b.40.4.5	65742
2igbA	179	48.91		
1j54A	186	49.97	c.55.3.5	77077
2aeeA	211	52.38	c.61.1.1	126620
1dy2A	180	52.49	d.169.1.5	42451
1xm7A	195	53.36	d.159.1.8	115473
1g2qA	187	54.11	c.61.1.1	65117
1wd5A	208	55.81	c.61.1.1	114524
1q33A	292	59.05	d.113.1.1	95657
1sjyA	159	60.53	d.113.1.1	98900
1j53A	186	62.90	c.55.3.5	77076
1djqA	729	64.19	c.1.4.1,c.3.1.1,c.4.1.1	28614,30315,30600
2g8mA	264	64.75		
2g8oA	264	66.28	d.117.1.1	134779
1ypvA	313	68.61		
1fxlA	167	69.56	d.58.7.1,d.58.7.1	39183,39184
1p5jA	372	71.49	c.79.1.1	104067
3cu5A	141	78.00		
2zctA	249	78.83		
1xhfA	123	79.72	c.23.1.1	122003
1hlgA	371	83.02	c.69.1.6	34656
1s98A	107	83.84	b.124.1.1	105377
1u9yA	284	84.66	c.61.1.2,c.61.1.2	119655,119656