# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2opgA 98 3.41e-15 2iwnA 97 7.29e-15 1x45A 98 9.39e-15 b.36.1.1 121679 2f0aA 98 1.01e-14 b.36.1.1 132661 2i1nA 102 1.35e-14 2jikA 101 1.47e-14 2awxA 105 1.76e-14 2he2A 102 2.27e-14 1tp5A 119 2.36e-14 b.36.1.1 119305 2fe5A 94 2.38e-14 b.36.1.1 133323 2fneA 117 2.67e-14 b.36.1.1 133813 1pdr 99 3.78e-14 2qg1A 92 3.78e-14 2jilA 97 4.12e-14 2q9vA 90 4.48e-14 2i04A 85 4.87e-14 1n7eA 97 4.93e-14 b.36.1.1 91691 1qauA 112 7.36e-14 b.36.1.1 24779 1g9oA 91 7.80e-14 b.36.1.1 60400 2qt5A 200 8.35e-14 1kwaA 88 1.08e-13 b.36.1.1 24772 2gzvA 114 1.13e-13 2egoA 96 1.16e-13 1nf3C 128 1.27e-13 b.36.1.1 85596 2h2bA 107 1.58e-13 2iwoA 120 1.80e-13 2ozfA 92 1.83e-13 1ihjA 98 1.88e-13 b.36.1.1 62382 1wf7A 103 3.49e-13 b.36.1.1 114577 2h3lA 103 3.67e-13 b.36.1.1 136046 1qavA 90 4.25e-13 b.36.1.1 24777 2pktA 91 5.19e-13 2uzcA 88 6.86e-13 2pa1A 87 7.98e-13 2eaqA 90 9.67e-13 1be9A 119 1.00e-12 b.36.1.1 24774 2he4A 90 1.13e-12 1q3oA 109 1.16e-12 b.36.1.1 95700 2q3gA 89 1.81e-12 1v5lA 103 2.06e-12 b.36.1.1 108378 2vphA 100 2.67e-12 1m5zA 91 2.82e-12 b.36.1.1 78676 1l6oA 95 2.86e-12 b.36.1.1 84534 1mfgA 95 3.11e-12 b.36.1.1 79043 2qkvA 96 3.59e-12 2ocsA 88 5.29e-12 2rczA 81 6.96e-12 1i92A 91 8.38e-12 b.36.1.1 61990 1b8qA 127 1.04e-11 b.36.1.1 24781 1qavB 115 1.12e-11 b.36.1.1 24780 2reyA 100 1.22e-11 1fc6A 388 2.02e-11 b.36.1.3,c.14.1.2 64738,64739 2fcfA 103 2.22e-11 b.36.1.1 133267 2f5yA 91 8.29e-11 b.36.1.1 133015 1r6jA 82 8.67e-11 b.36.1.1 97151 3bpuA 88 3.05e-10 1ky9A 448 1.98e-08 b.36.1.4,b.47.1.1 73198,73199 2adzA 178 7.40e-06 b.55.1.1 126599 2p3wA 112 7.44e-06 1lcyA 325 1.63e-05 b.36.1.4,b.47.1.1 73834,73835 2z9iA 324 2.79e-05 2i6vA 87 4.90e-05 1te0A 318 0.000107 b.36.1.4,b.47.1.1 112400,112401 1y8tA 324 0.000131 b.36.1.4,b.47.1.1 122763,122764 1sotA 320 0.000222 b.36.1.4,b.47.1.1 105852,105853 1n6eA 1071 0.01535 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1k32A 1045 0.03458 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 0.2357 c.14.1.2 66425 2ps1A 226 0.6068 2yzkA 178 1.107 1oroA 213 1.271 c.61.1.1 34093 1lh0A 213 1.702 c.61.1.1 73896 1ao0A 459 2.893 c.61.1.1,d.153.1.1 34049,41816 2p1zA 180 3.342 2dy0A 190 5.682 2q07A 306 6.440 1y0bA 197 6.779 c.61.1.1 122476 1zn8A 180 7.324 c.61.1.1 125376 1opr 213 7.428 2aeeA 211 8.476 c.61.1.1 126620 1z7yA 322 8.808 c.79.1.1 124679 2plcA 274 11.30 c.1.18.2 29614 2jsnA 96 12.31 1ckmA 330 15.73 b.40.4.6,d.142.2.3 25358,41585 1dekA 241 16.67 c.37.1.1 31842 1ecfA 504 21.60 c.61.1.1,d.153.1.1 34053,41820 2guiA 194 22.26 c.55.3.5 135737 1vchA 175 24.68 c.61.1.1 119980 2d9iA 96 26.56 1p5jA 372 31.84 c.79.1.1 104067 1g0rA 293 34.91 c.68.1.6 34532 1vs0A 310 35.55 1vdmA 153 36.40 c.61.1.1 119994 1qb7A 236 39.62 c.61.1.1 34087 1q33A 292 40.21 d.113.1.1 95657 1dy2A 180 43.56 d.169.1.5 42451 1pwhA 327 45.26 c.79.1.1 95224 1j53A 186 45.31 c.55.3.5 77076 1ta9A 450 46.86 1l1qA 186 48.39 c.61.1.1 77653 1wd5A 208 49.93 c.61.1.1 114524 2g8mA 264 50.90 1g2qA 187 57.38 c.61.1.1 65117 1j54A 186 58.25 c.55.3.5 77077 1p16A 395 59.31 b.40.4.6,d.142.2.3 87661,87662 1rqpA 299 59.47 b.141.1.1,c.132.1.1 97754,97755 1zunB 434 63.30 b.43.3.1,b.44.1.1,c.37.1.8 125677,125678,125679 2cfmA 561 64.26 1s98A 107 64.35 b.124.1.1 105377 2g8oA 264 66.29 d.117.1.1 134779 1djqA 729 66.65 c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 1koe 172 67.97 1u9yA 284 71.77 c.61.1.2,c.61.1.2 119655,119656 1e2xA 243 72.09 a.4.5.6,a.78.1.1 16113,18443 1ypvA 313 73.17 2ek5A 129 77.88 1l2tA 235 80.37 c.37.1.12 73514 2ebuA 112 81.03 2cy5A 140 83.61 b.55.1.2 131018 1csp 67 84.24 2igbA 179 86.36 1h95A 79 88.57 b.40.4.5 65742