# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2opgA 98 1.11e-16 2i1nA 102 3.13e-16 2f0aA 98 3.68e-16 b.36.1.1 132661 2awxA 105 3.71e-16 1x45A 98 4.19e-16 b.36.1.1 121679 2iwnA 97 6.23e-16 2fneA 117 8.26e-16 b.36.1.1 133813 2fe5A 94 8.73e-16 b.36.1.1 133323 1tp5A 119 9.29e-16 b.36.1.1 119305 2he2A 102 9.64e-16 2jikA 101 1.03e-15 2i04A 85 1.37e-15 2jilA 97 1.49e-15 2q9vA 90 1.76e-15 2qg1A 92 2.10e-15 1n7eA 97 2.11e-15 b.36.1.1 91691 1pdr 99 2.47e-15 2qt5A 200 2.74e-15 2gzvA 114 3.07e-15 1kwaA 88 3.32e-15 b.36.1.1 24772 1qauA 112 5.09e-15 b.36.1.1 24779 1g9oA 91 5.38e-15 b.36.1.1 60400 2egoA 96 7.88e-15 2h2bA 107 8.04e-15 2iwoA 120 8.13e-15 1ihjA 98 9.48e-15 b.36.1.1 62382 1nf3C 128 1.10e-14 b.36.1.1 85596 2ozfA 92 1.43e-14 2h3lA 103 2.20e-14 b.36.1.1 136046 1qavA 90 2.54e-14 b.36.1.1 24777 1wf7A 103 2.72e-14 b.36.1.1 114577 2uzcA 88 3.35e-14 2eaqA 90 3.93e-14 2pa1A 87 4.37e-14 2pktA 91 4.60e-14 1be9A 119 6.14e-14 b.36.1.1 24774 1v5lA 103 8.11e-14 b.36.1.1 108378 1mfgA 95 1.23e-13 b.36.1.1 79043 1q3oA 109 1.34e-13 b.36.1.1 95700 2vphA 100 1.40e-13 2he4A 90 1.52e-13 2q3gA 89 1.68e-13 1m5zA 91 3.04e-13 b.36.1.1 78676 2ocsA 88 3.33e-13 2qkvA 96 3.38e-13 1l6oA 95 3.63e-13 b.36.1.1 84534 2rczA 81 5.03e-13 1i92A 91 1.06e-12 b.36.1.1 61990 1qavB 115 1.11e-12 b.36.1.1 24780 2reyA 100 1.46e-12 1fc6A 388 1.54e-12 b.36.1.3,c.14.1.2 64738,64739 2fcfA 103 1.57e-12 b.36.1.1 133267 1b8qA 127 1.87e-12 b.36.1.1 24781 2f5yA 91 3.38e-12 b.36.1.1 133015 1r6jA 82 7.13e-12 b.36.1.1 97151 3bpuA 88 3.89e-11 1ky9A 448 1.67e-09 b.36.1.4,b.47.1.1 73198,73199 1lcyA 325 1.37e-06 b.36.1.4,b.47.1.1 73834,73835 2p3wA 112 1.43e-06 2adzA 178 2.07e-06 b.55.1.1 126599 2z9iA 324 7.78e-06 1te0A 318 1.06e-05 b.36.1.4,b.47.1.1 112400,112401 2i6vA 87 1.26e-05 1y8tA 324 1.27e-05 b.36.1.4,b.47.1.1 122763,122764 1sotA 320 2.04e-05 b.36.1.4,b.47.1.1 105852,105853 1n6eA 1071 0.007342 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1k32A 1045 0.01985 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 0.1975 c.14.1.2 66425 2ps1A 226 0.2871 1ao0A 459 0.6984 c.61.1.1,d.153.1.1 34049,41816 1lh0A 213 0.7392 c.61.1.1 73896 2yzkA 178 0.8304 1oroA 213 1.423 c.61.1.1 34093 2p1zA 180 1.441 2q07A 306 1.520 1opr 213 2.287 1y0bA 197 2.351 c.61.1.1 122476 1zn8A 180 3.720 c.61.1.1 125376 2dy0A 190 3.770 1ecfA 504 5.447 c.61.1.1,d.153.1.1 34053,41820 1vchA 175 7.243 c.61.1.1 119980 2aeeA 211 8.709 c.61.1.1 126620 1z7yA 322 9.025 c.79.1.1 124679 2jsnA 96 11.44 1ckmA 330 11.68 b.40.4.6,d.142.2.3 25358,41585 1dekA 241 12.38 c.37.1.1 31842 1wd5A 208 12.93 c.61.1.1 114524 2plcA 274 13.57 c.1.18.2 29614 1l1qA 186 15.90 c.61.1.1 77653 1g0rA 293 17.36 c.68.1.6 34532 1g2qA 187 17.59 c.61.1.1 65117 2guiA 194 21.63 c.55.3.5 135737 1ta9A 450 22.22 2d9iA 96 22.24 1q33A 292 25.55 d.113.1.1 95657 1p16A 395 31.24 b.40.4.6,d.142.2.3 87661,87662 2igbA 179 32.98 1vs0A 310 33.90 1dy2A 180 34.47 d.169.1.5 42451 1vdmA 153 35.56 c.61.1.1 119994 1qb7A 236 38.16 c.61.1.1 34087 1x0gA 112 38.54 1vctA 205 39.04 a.7.12.1,d.286.1.1 119986,119987 3ce9A 354 39.65 1u9yA 284 42.57 c.61.1.2,c.61.1.2 119655,119656 1j54A 186 45.23 c.55.3.5 77077 1j53A 186 45.58 c.55.3.5 77076 1gph1 465 46.10 1s98A 107 47.89 b.124.1.1 105377 3dahA 319 50.71 2ek8A 421 54.43 1xhfA 123 55.67 c.23.1.1 122003 1r94A 118 56.09 b.124.1.1 97251 1xm7A 195 58.93 d.159.1.8 115473 1ciqA 40 59.77 d.40.1.1 38576 2ek5A 129 64.39 1djqA 729 73.09 c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 1h95A 79 73.53 b.40.4.5 65742 1nwbA 124 75.32 b.124.1.1 86296 2gn0A 342 75.39 1e2xA 243 77.17 a.4.5.6,a.78.1.1 16113,18443 1l2tA 235 77.63 c.37.1.12 73514 1p5jA 372 79.39 c.79.1.1 104067 1w30A 201 79.63 c.61.1.1 114118 2a19A 175 80.58 2ahrA 259 80.58 a.100.1.10,c.2.1.6 126775,126776 2jbhA 225 82.16 2a9oA 120 85.16 c.23.1.1 126444