# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2i1nA	102	1.75e-08		
2opgA	98	2.06e-08		
2fe5A	94	2.93e-08	b.36.1.1	133323
2jikA	101	3.37e-08		
2awxA	105	3.40e-08		
2fneA	117	3.56e-08	b.36.1.1	133813
2iwnA	97	3.96e-08		
2he2A	102	4.41e-08		
1pdr	99	5.04e-08		
1x45A	98	5.16e-08	b.36.1.1	121679
2jilA	97	6.04e-08		
1tp5A	119	6.18e-08	b.36.1.1	119305
1n7eA	97	7.52e-08	b.36.1.1	91691
2q9vA	90	7.57e-08		
2qt5A	200	9.10e-08		
2qg1A	92	9.62e-08		
2gzvA	114	9.65e-08		
2f0aA	98	9.93e-08	b.36.1.1	132661
1wf7A	103	1.04e-07	b.36.1.1	114577
1g9oA	91	1.43e-07	b.36.1.1	60400
2iwoA	120	1.46e-07		
2i04A	85	1.49e-07		
1kwaA	88	1.83e-07	b.36.1.1	24772
2h2bA	107	1.90e-07		
2h3lA	103	2.41e-07	b.36.1.1	136046
2uzcA	88	2.91e-07		
2ozfA	92	3.09e-07		
2egoA	96	3.11e-07		
2pa1A	87	3.12e-07		
2pktA	91	3.60e-07		
1qavA	90	4.18e-07	b.36.1.1	24777
1mfgA	95	5.16e-07	b.36.1.1	79043
2vphA	100	5.49e-07		
1be9A	119	5.52e-07	b.36.1.1	24774
1qauA	112	6.22e-07	b.36.1.1	24779
1v5lA	103	6.24e-07	b.36.1.1	108378
1nf3C	128	6.25e-07	b.36.1.1	85596
2q3gA	89	6.92e-07		
1m5zA	91	7.12e-07	b.36.1.1	78676
2eaqA	90	7.91e-07		
1ihjA	98	8.95e-07	b.36.1.1	62382
1q3oA	109	1.07e-06	b.36.1.1	95700
1l6oA	95	1.64e-06	b.36.1.1	84534
2he4A	90	1.76e-06		
1fc6A	388	1.90e-06	b.36.1.3,c.14.1.2	64738,64739
2qkvA	96	2.19e-06		
2ocsA	88	2.63e-06		
2fcfA	103	2.64e-06	b.36.1.1	133267
1i92A	91	3.53e-06	b.36.1.1	61990
2f5yA	91	9.58e-06	b.36.1.1	133015
1b8qA	127	1.13e-05	b.36.1.1	24781
1qavB	115	1.16e-05	b.36.1.1	24780
2reyA	100	1.23e-05		
1r6jA	82	1.29e-05	b.36.1.1	97151
3bpuA	88	5.09e-05		
2rczA	81	5.23e-05		
1ky9A	448	0.000245	b.36.1.4,b.47.1.1	73198,73199
1lcyA	325	0.006367	b.36.1.4,b.47.1.1	73834,73835
2p3wA	112	0.006825		
1y8tA	324	0.01436	b.36.1.4,b.47.1.1	122763,122764
2z9iA	324	0.01477		
1te0A	318	0.01733	b.36.1.4,b.47.1.1	112400,112401
2i6vA	87	0.03283		
1sotA	320	0.05875	b.36.1.4,b.47.1.1	105852,105853
2adzA	178	0.1087	b.55.1.1	126599
1k32A	1045	3.386	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1n6eA	1071	4.006	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	80149,80150,80151,80152
1j7xA	302	7.875	c.14.1.2	66425
2q07A	306	13.92		
1ha1	184	37.68		
1fxlA	167	38.09	d.58.7.1,d.58.7.1	39183,39184
2jsnA	96	40.36		
2guiA	194	56.58	c.55.3.5	135737
1dy2A	180	60.59	d.169.1.5	42451
1q33A	292	63.95	d.113.1.1	95657
1oroA	213	67.14	c.61.1.1	34093
1ta9A	450	67.76		
1ao0A	459	76.62	c.61.1.1,d.153.1.1	34049,41816
2ywkA	95	86.56		
2ps1A	226	89.80