# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2i1nA	102	1.54e-12		
2opgA	98	2.01e-12		
2awxA	105	2.63e-12		
2fneA	117	2.97e-12	b.36.1.1	133813
2jilA	97	3.34e-12		
2fe5A	94	3.67e-12	b.36.1.1	133323
2he2A	102	4.00e-12		
2jikA	101	4.59e-12		
1tp5A	119	6.05e-12	b.36.1.1	119305
2qt5A	200	6.12e-12		
2iwnA	97	6.34e-12		
1pdr	99	7.53e-12		
2qg1A	92	1.03e-11		
2h2bA	107	1.12e-11		
1x45A	98	1.19e-11	b.36.1.1	121679
2q9vA	90	1.35e-11		
1n7eA	97	1.73e-11	b.36.1.1	91691
2i04A	85	1.88e-11		
2f0aA	98	2.03e-11	b.36.1.1	132661
2gzvA	114	2.28e-11		
2iwoA	120	2.47e-11		
1nf3C	128	2.73e-11	b.36.1.1	85596
1wf7A	103	2.89e-11	b.36.1.1	114577
1qavA	90	2.98e-11	b.36.1.1	24777
1g9oA	91	3.28e-11	b.36.1.1	60400
1ihjA	98	3.53e-11	b.36.1.1	62382
1kwaA	88	4.33e-11	b.36.1.1	24772
2h3lA	103	5.77e-11	b.36.1.1	136046
2ozfA	92	6.55e-11		
2egoA	96	6.81e-11		
2uzcA	88	8.33e-11		
1be9A	119	8.57e-11	b.36.1.1	24774
1qauA	112	1.04e-10	b.36.1.1	24779
2pa1A	87	1.07e-10		
2pktA	91	1.16e-10		
1mfgA	95	1.80e-10	b.36.1.1	79043
1v5lA	103	1.87e-10	b.36.1.1	108378
2vphA	100	2.06e-10		
1q3oA	109	2.17e-10	b.36.1.1	95700
2q3gA	89	3.05e-10		
2eaqA	90	3.73e-10		
2qkvA	96	3.74e-10		
1m5zA	91	5.38e-10	b.36.1.1	78676
2he4A	90	6.97e-10		
1l6oA	95	7.03e-10	b.36.1.1	84534
2ocsA	88	1.81e-09		
1i92A	91	1.84e-09	b.36.1.1	61990
2fcfA	103	1.85e-09	b.36.1.1	133267
1fc6A	388	3.25e-09	b.36.1.3,c.14.1.2	64738,64739
1b8qA	127	4.43e-09	b.36.1.1	24781
2reyA	100	6.77e-09		
1qavB	115	8.45e-09	b.36.1.1	24780
2f5yA	91	1.28e-08	b.36.1.1	133015
2rczA	81	1.60e-08		
1r6jA	82	2.10e-08	b.36.1.1	97151
3bpuA	88	1.14e-07		
1ky9A	448	1.32e-06	b.36.1.4,b.47.1.1	73198,73199
2p3wA	112	0.000102		
1lcyA	325	0.000228	b.36.1.4,b.47.1.1	73834,73835
2i6vA	87	0.000320		
2z9iA	324	0.000508		
1te0A	318	0.001281	b.36.1.4,b.47.1.1	112400,112401
1y8tA	324	0.001497	b.36.1.4,b.47.1.1	122763,122764
1sotA	320	0.009750	b.36.1.4,b.47.1.1	105852,105853
2adzA	178	0.02433	b.55.1.1	126599
1n6eA	1071	0.4747	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	80149,80150,80151,80152
1oroA	213	0.8509	c.61.1.1	34093
1j7xA	302	1.430	c.14.1.2	66425
1k32A	1045	1.644	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
2ps1A	226	2.023		
1opr	213	2.528		
1lh0A	213	3.533	c.61.1.1	73896
2p1zA	180	6.415		
2q07A	306	7.161		
1q33A	292	15.55	d.113.1.1	95657
2jsnA	96	16.78		
1ecfA	504	18.82	c.61.1.1,d.153.1.1	34053,41820
2f7lA	455	24.22		
1ao0A	459	27.51	c.61.1.1,d.153.1.1	34049,41816
2guiA	194	29.60	c.55.3.5	135737
1dekA	241	31.50	c.37.1.1	31842
2yzkA	178	34.19		
1rqpA	299	40.49	b.141.1.1,c.132.1.1	97754,97755
1kk1A	410	42.33	b.43.3.1,b.44.1.1,c.37.1.8	72634,72635,72636
1z7yA	322	42.90	c.79.1.1	124679
1j54A	186	43.98	c.55.3.5	77077
2zmvA	227	48.56		
2g8mA	264	50.30		
1ua4A	455	56.53	c.72.1.3	99128
2fuvA	549	58.28		
1vchA	175	64.73	c.61.1.1	119980
1f3zA	161	68.89	b.84.3.1	28273
2hf9A	226	69.65		
2g8oA	264	70.04	d.117.1.1	134779
2d9iA	96	70.52		
1xm7A	195	71.90	d.159.1.8	115473
1tuoA	464	73.86		
1xv5A	401	79.09		
1wqaA	455	79.16		
1gpr	162	83.14		
1gph1	465	84.97		
1p5dX	463	88.93	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	94138,94139,94140,94141
2igbA	179	89.93