# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i1nA 102 4.40e-17 2opgA 98 6.70e-17 2jikA 101 1.63e-16 2jilA 97 2.37e-16 2fe5A 94 3.13e-16 b.36.1.1 133323 2h2bA 107 7.21e-16 1g9oA 91 1.12e-15 b.36.1.1 60400 2iwnA 97 1.34e-15 2fneA 117 1.48e-15 b.36.1.1 133813 2gzvA 114 2.41e-15 2awxA 105 2.68e-15 2egoA 96 2.98e-15 1n7eA 97 3.26e-15 b.36.1.1 91691 2ozfA 92 3.33e-15 2h3lA 103 3.49e-15 b.36.1.1 136046 2qg1A 92 3.92e-15 2he2A 102 4.11e-15 2uzcA 88 4.76e-15 1qavA 90 7.61e-15 b.36.1.1 24777 1mfgA 95 7.80e-15 b.36.1.1 79043 2q3gA 89 1.20e-14 2qt5A 200 1.37e-14 1tp5A 119 2.03e-14 b.36.1.1 119305 1q3oA 109 2.38e-14 b.36.1.1 95700 1ihjA 98 2.43e-14 b.36.1.1 62382 1pdr 99 2.43e-14 2pktA 91 3.25e-14 1x45A 98 5.55e-14 b.36.1.1 121679 1kwaA 88 9.77e-14 b.36.1.1 24772 2i04A 85 9.87e-14 2he4A 90 1.00e-13 1wf7A 103 1.07e-13 b.36.1.1 114577 1be9A 119 1.28e-13 b.36.1.1 24774 2iwoA 120 2.33e-13 1nf3C 128 3.02e-13 b.36.1.1 85596 2q9vA 90 4.67e-13 2qkvA 96 6.65e-13 2pa1A 87 1.15e-12 2fcfA 103 1.17e-12 b.36.1.1 133267 1m5zA 91 1.18e-12 b.36.1.1 78676 2f5yA 91 1.28e-12 b.36.1.1 133015 1i92A 91 1.87e-12 b.36.1.1 61990 1l6oA 95 1.95e-12 b.36.1.1 84534 2ocsA 88 3.03e-12 1qauA 112 4.29e-12 b.36.1.1 24779 2f0aA 98 5.38e-12 b.36.1.1 132661 1r6jA 82 3.07e-11 b.36.1.1 97151 2reyA 100 4.92e-11 2vphA 100 5.38e-11 2eaqA 90 1.05e-10 1v5lA 103 2.59e-10 b.36.1.1 108378 2rczA 81 1.05e-09 1qavB 115 1.15e-09 b.36.1.1 24780 1b8qA 127 2.59e-09 b.36.1.1 24781 1fc6A 388 4.48e-09 b.36.1.3,c.14.1.2 64738,64739 3bpuA 88 2.66e-08 2i6vA 87 1.08e-05 1te0A 318 1.59e-05 b.36.1.4,b.47.1.1 112400,112401 2p3wA 112 1.59e-05 1y8tA 324 1.61e-05 b.36.1.4,b.47.1.1 122763,122764 1lcyA 325 4.29e-05 b.36.1.4,b.47.1.1 73834,73835 2z9iA 324 0.000343 1ky9A 448 0.1110 b.36.1.4,b.47.1.1 73198,73199 1n6eA 1071 0.1804 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1k32A 1045 0.4770 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2qyaA 124 2.798 1sotA 320 6.183 b.36.1.4,b.47.1.1 105852,105853 1lh0A 213 8.679 c.61.1.1 73896 2dstA 131 9.250 2btuA 346 12.32 2f9lA 199 14.64 c.37.1.8 133166 1bn7A 294 14.87 c.69.1.8 34677 2jsnA 96 15.59 2o38A 120 17.43 1s3zA 165 18.12 d.108.1.1 105250 1cjwA 166 19.81 d.108.1.1 40818 1bn6A 294 20.12 c.69.1.8 34678 1oixA 191 21.40 c.37.1.8 118710 1opr 213 22.86 1ha1 184 23.40 3bdiA 207 23.42 2r7hA 177 23.50 2c5qA 240 23.74 1uheA 97 24.87 1cq3A 233 26.48 b.27.1.1 23923 1o6dA 163 27.84 c.116.1.3 92567 1z0jA 170 28.08 c.37.1.8 124319 2yysA 286 30.31 2e3jA 356 30.62 1vc3B 97 30.76 1z4eA 153 32.36 d.108.1.1 124431 1f3zA 161 32.68 b.84.3.1 28273 2ps1A 226 34.99 1l3kA 196 37.13 d.58.7.1,d.58.7.1 73539,73540 1xqwA 293 37.33 1zo0A 126 37.36 d.108.1.7 125416 2dtjA 178 37.79 1mk4A 157 39.13 d.108.1.1 84979 3sxlA 184 40.26 d.58.7.1,d.58.7.1 39173,39174 1oroA 213 42.21 c.61.1.1 34093 2qklA 127 43.28 1ek0A 170 47.56 c.37.1.8 32076 2gf9A 189 48.15 1kuxA 207 48.50 d.108.1.1 73021 1y9kA 157 48.58 d.108.1.1 122779 1tiqA 180 48.86 d.108.1.1 107010 1mtzA 293 49.30 c.69.1.7 79467 1fxlA 167 49.39 d.58.7.1,d.58.7.1 39183,39184 1wouA 123 50.11 c.47.1.16 109471 1go3E 187 54.41 b.40.4.5,d.230.1.1 83054,83055 1d5cA 162 54.69 c.37.1.8 32021 1b6bA 174 58.03 d.108.1.1 40819 2a14A 263 59.70 c.66.1.15 125972 2oq2A 261 61.37 1u94A 356 61.41 c.37.1.11,d.48.1.1 107743,107744 2ew1A 201 61.67 c.37.1.8 132446 1huqA 164 63.41 c.37.1.8 32020 2go9A 161 63.67 1sjyA 159 64.09 d.113.1.1 98900 1cvjA 190 67.32 d.58.7.1,d.58.7.1 39191,39192 3rabA 169 69.34 c.37.1.8 32018 1q0rA 298 70.09 c.69.1.28 95508 2z2mC 125 71.00 2j3tD 219 71.07 1b7fA 168 71.36 d.58.7.1,d.58.7.1 39169,39170 1y0bA 197 71.69 c.61.1.1 122476 2bswA 146 72.71 d.108.1.1 129127 1wv8A 73 73.01 d.304.1.1 121326 1z2aA 168 73.77 c.37.1.8 124374 1gheA 177 73.92 d.108.1.1 76222 2izzA 322 74.00 1lngA 87 74.25 d.201.1.1 74045 1ckmA 330 74.29 b.40.4.6,d.142.2.3 25358,41585 2dxqA 150 76.62 2zmvA 227 81.74 2zc3C 125 82.11 2qruA 274 82.27 1svyA 114 83.63 d.109.1.1 40831 1db2A 377 85.49 e.1.1.1 42672 1ciqA 40 86.99 d.40.1.1 38576 1kqfA 1015 88.36 b.52.2.2,c.81.1.1 72871,72872 2j01Q 141 89.81 2ffqA 171 89.81